Variant report

Variant	rs55745922
Chromosome Location	chr7:47780736-47780737
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs12374833	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1542322	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16881580	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17172895	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17172896	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17172897	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17172898	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17544941	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17627420	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17627439	0.93[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs55683481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56017135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56024530	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57720210	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59963947	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60404365	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73093024	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73093028	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73093030	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73093036	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73093039	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73093041	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73093043	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73093044	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73093048	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73093062	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73093065	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73093067	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73093188	0.81[ASN][1000 genomes]
rs73094741	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73094761	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73094779	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73094780	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73094782	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73094784	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73102790	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73102792	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73102794	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73102797	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73102799	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73104703	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73104705	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73104711	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73104712	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73104714	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73104717	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73104718	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7789757	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7790043	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7795201	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7805780	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7808100	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026223	chr7:47560728-48243287	Genic enhancers Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv888003	chr7:47694270-47907214	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1018608	chr7:47708525-47831535	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv1022906	chr7:47709936-47831535	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv1015163	chr7:47734913-47832389	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv538831	chr7:47734913-47832389	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
7	nsv869585	chr7:47765428-48151324	Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
8	nsv830990	chr7:47767540-47837584	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:47774400-47802600	Weak transcription	Pancreas	Pancrea
2	chr7:47774600-47781000	Enhancers	HepG2	liver
3	chr7:47774600-47783800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:47775400-47783400	Weak transcription	A549	lung
5	chr7:47777800-47781800	Weak transcription	Fetal Lung	lung
6	chr7:47779000-47782000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr7:47779000-47783400	Weak transcription	Primary B cells from peripheral blood	blood
8	chr7:47779200-47783600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr7:47779200-47783800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr7:47779400-47783400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr7:47779400-47783400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr7:47779400-47783600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr7:47779400-47783800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr7:47779600-47783400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr7:47779800-47781400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr7:47779800-47781600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr7:47779800-47781600	Weak transcription	NHLF	lung
18	chr7:47779800-47783400	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr7:47779800-47783600	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr7:47780000-47781600	Weak transcription	Fetal Stomach	stomach
21	chr7:47780000-47783800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr7:47780200-47781400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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