Variant report

Variant	rs7795201
Chromosome Location	chr7:47756114-47756115
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs12374833	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1542322	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16881580	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17172895	0.83[ASN][1000 genomes]
rs17172896	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17172897	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17172898	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17544941	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17627420	0.83[ASN][1000 genomes]
rs55683481	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55745922	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56017135	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56024530	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57720210	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59963947	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60404365	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73093024	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73093028	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73093030	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73093036	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73093039	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73093041	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73093043	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73093044	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73093048	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73093062	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73093065	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73093067	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73094741	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73094761	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73094779	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73094780	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73094782	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73094784	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73102790	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73102792	0.83[ASN][1000 genomes]
rs73102794	0.83[ASN][1000 genomes]
rs73102797	0.83[ASN][1000 genomes]
rs73104703	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73104705	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73104711	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73104712	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73104714	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73104717	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73104718	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7789757	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7790043	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7805780	0.83[ASN][1000 genomes]
rs7808100	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026223	chr7:47560728-48243287	Genic enhancers Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv888003	chr7:47694270-47907214	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1024392	chr7:47707023-47758976	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1018608	chr7:47708525-47831535	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv1022906	chr7:47709936-47831535	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv1028355	chr7:47715107-47758976	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1015163	chr7:47734913-47832389	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
8	nsv538831	chr7:47734913-47832389	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:47750400-47764000	Weak transcription	A549	lung
2	chr7:47750600-47758800	Weak transcription	Spleen	Spleen
3	chr7:47751600-47760000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:47753400-47757200	Enhancers	HepG2	liver
5	chr7:47754800-47759000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr7:47755400-47760200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr7:47755600-47758600	Weak transcription	Fetal Intestine Small	intestine
8	chr7:47755600-47760200	Weak transcription	Liver	Liver
9	chr7:47755800-47759600	Weak transcription	Primary B cells from peripheral blood	blood
10	chr7:47755800-47759800	Weak transcription	GM12878-XiMat	blood

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