Variant report

Variant	rs73093036
Chromosome Location	chr7:47762807-47762808
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs12374833	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1542322	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16881580	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17172895	0.83[ASN][1000 genomes]
rs17172896	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17172897	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17172898	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17544941	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17627420	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55683481	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55745922	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56017135	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56024530	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57720210	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59963947	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60404365	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73093024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73093028	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73093030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73093039	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73093041	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73093043	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73093044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73093048	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73093062	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73093065	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73093067	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73094741	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73094761	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73094779	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73094780	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73094782	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73094784	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73102790	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73102792	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73102794	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73102797	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73102799	0.84[EUR][1000 genomes]
rs73104703	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73104705	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73104711	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73104712	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73104714	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73104717	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73104718	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7789757	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7790043	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7795201	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7805780	0.83[ASN][1000 genomes]
rs7808100	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026223	chr7:47560728-48243287	Genic enhancers Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv888003	chr7:47694270-47907214	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1018608	chr7:47708525-47831535	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv1022906	chr7:47709936-47831535	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv1015163	chr7:47734913-47832389	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv538831	chr7:47734913-47832389	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:47750400-47764000	Weak transcription	A549	lung
2	chr7:47759600-47767000	Enhancers	Primary B cells from peripheral blood	blood
3	chr7:47760400-47763800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:47760400-47763800	Weak transcription	Fetal Kidney	kidney
5	chr7:47760400-47764000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr7:47760600-47763800	Weak transcription	Placenta	Placenta
7	chr7:47760600-47763800	Weak transcription	NHLF	lung
8	chr7:47760600-47764000	Weak transcription	Fetal Lung	lung
9	chr7:47760800-47763600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr7:47760800-47763800	Weak transcription	Fetal Intestine Small	intestine
11	chr7:47760800-47764000	Weak transcription	Fetal Intestine Large	intestine
12	chr7:47760800-47764800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr7:47761000-47763800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr7:47761000-47763800	Weak transcription	Fetal Muscle Leg	muscle
15	chr7:47761000-47764000	Weak transcription	Fetal Stomach	stomach
16	chr7:47761000-47764000	Weak transcription	Pancreas	Pancrea
17	chr7:47761000-47765000	Weak transcription	GM12878-XiMat	blood
18	chr7:47761200-47763400	Weak transcription	Primary B cells from cord blood	blood
19	chr7:47761200-47763800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr7:47761200-47763800	Weak transcription	Spleen	Spleen
21	chr7:47761400-47764200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr7:47761600-47763000	Weak transcription	Fetal Muscle Trunk	muscle
23	chr7:47762000-47763000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr7:47762400-47763200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr7:47762400-47763800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr7:47762400-47763800	Weak transcription	HepG2	liver
27	chr7:47762600-47765200	Enhancers	Placenta Amnion	Placenta Amnion

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