Variant report

Variant	rs56024530
Chromosome Location	chr7:47767258-47767259
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs12374833	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1542322	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16881580	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17172895	0.83[ASN][1000 genomes]
rs17172896	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17172897	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17172898	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17544941	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17627420	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55683481	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55745922	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56017135	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57720210	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59963947	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60404365	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73093024	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73093028	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73093030	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73093036	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73093039	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73093041	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73093043	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73093044	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73093048	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73093062	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73093065	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73093067	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73094741	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73094761	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73094779	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73094780	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73094782	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73094784	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73102790	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73102792	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73102794	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73102797	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73102799	0.84[EUR][1000 genomes]
rs73104703	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73104705	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73104711	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73104712	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73104714	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73104717	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73104718	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7789757	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7790043	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7795201	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7805780	0.83[ASN][1000 genomes]
rs7808100	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026223	chr7:47560728-48243287	Genic enhancers Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv888003	chr7:47694270-47907214	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1018608	chr7:47708525-47831535	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv1022906	chr7:47709936-47831535	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv1015163	chr7:47734913-47832389	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv538831	chr7:47734913-47832389	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
7	nsv522585	chr7:47764737-47777685	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv869585	chr7:47765428-48151324	Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:47764800-47768000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr7:47765000-47768200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:47765000-47769800	Weak transcription	Placenta	Placenta
4	chr7:47765000-47769800	Weak transcription	HSMMtube	muscle
5	chr7:47765200-47768000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:47765200-47769000	Weak transcription	NHLF	lung
7	chr7:47766000-47777400	Weak transcription	Spleen	Spleen
8	chr7:47766200-47768400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr7:47766200-47769600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr7:47766600-47770800	Weak transcription	HepG2	liver
11	chr7:47766600-47772800	Weak transcription	Liver	Liver
12	chr7:47766800-47768000	Weak transcription	Fetal Intestine Small	intestine
13	chr7:47766800-47769800	Weak transcription	A549	lung
14	chr7:47767000-47769200	Weak transcription	Primary B cells from cord blood	blood
15	chr7:47767000-47771800	Weak transcription	Primary B cells from peripheral blood	blood
16	chr7:47767000-47773800	Weak transcription	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links