Variant report

Variant	rs55752011
Chromosome Location	chr4:62868085-62868086
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17082578	1.00[AMR][1000 genomes]
rs35637502	1.00[AMR][1000 genomes]
rs55897724	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59144223	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73823288	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73823289	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73823290	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73823292	0.82[AFR][1000 genomes]
rs73823293	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73823295	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73823297	1.00[AMR][1000 genomes]
rs73823298	1.00[AMR][1000 genomes]
rs73823300	1.00[AMR][1000 genomes]
rs73823301	1.00[AMR][1000 genomes]
rs73825603	1.00[AMR][1000 genomes]
rs73825622	1.00[AMR][1000 genomes]
rs73825635	1.00[AMR][1000 genomes]
rs73825644	1.00[AMR][1000 genomes]
rs7674506	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461377	chr4:62368762-62883431	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594328	chr4:62368762-62883431	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1012574	chr4:62844264-62954187	Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62824600-62877400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:62850600-62877000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr4:62859200-62872800	Weak transcription	Fetal Muscle Leg	muscle
4	chr4:62859600-62869200	Weak transcription	Brain Anterior Caudate	brain
5	chr4:62859600-62870600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr4:62862200-62884600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:62865200-62875400	Weak transcription	Fetal Stomach	stomach
8	chr4:62868000-62868200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr4:62868000-62872000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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