Variant report

Variant	rs73825603
Chromosome Location	chr4:62936601-62936602
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17082578	1.00[AMR][1000 genomes]
rs35637502	1.00[AMR][1000 genomes]
rs55752011	1.00[AMR][1000 genomes]
rs55897724	1.00[AMR][1000 genomes]
rs59144223	1.00[AMR][1000 genomes]
rs73823288	1.00[AMR][1000 genomes]
rs73823289	1.00[AMR][1000 genomes]
rs73823290	1.00[AMR][1000 genomes]
rs73823293	1.00[AMR][1000 genomes]
rs73823295	1.00[AMR][1000 genomes]
rs73823297	1.00[AMR][1000 genomes]
rs73823298	1.00[AMR][1000 genomes]
rs73823300	1.00[AMR][1000 genomes]
rs73823301	1.00[AMR][1000 genomes]
rs73825622	1.00[AMR][1000 genomes]
rs73825635	1.00[AMR][1000 genomes]
rs73825644	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012574	chr4:62844264-62954187	Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv879078	chr4:62923797-63054757	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62925000-62939400	Weak transcription	Fetal Lung	lung
2	chr4:62928600-62938000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr4:62929400-62936800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr4:62932800-62937800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr4:62933000-62937600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr4:62933800-62939400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr4:62934000-62937800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr4:62934200-62937200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr4:62935200-62937600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr4:62935200-62937600	Weak transcription	Brain Germinal Matrix	brain
11	chr4:62935200-62937600	Weak transcription	Fetal Brain Female	brain
12	chr4:62935200-62937600	Weak transcription	Fetal Intestine Small	intestine
13	chr4:62935400-62937800	Weak transcription	Brain Hippocampus Middle	brain
14	chr4:62935800-62937000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr4:62936000-62936800	Strong transcription	Brain Substantia Nigra	brain
16	chr4:62936000-62936800	Strong transcription	Fetal Muscle Leg	muscle
17	chr4:62936600-62936800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr4:62936600-62938200	Weak transcription	Brain Anterior Caudate	brain
19	chr4:62936600-62938200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr4:62936600-62938200	Weak transcription	Fetal Stomach	stomach
21	chr4:62936600-62938400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr4:62936600-62939200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr4:62936600-62940600	Weak transcription	Brain Inferior Temporal Lobe	brain

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