Variant report

Variant	rs55897724
Chromosome Location	chr4:62858111-62858112
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17082578	1.00[AMR][1000 genomes]
rs35637502	1.00[AMR][1000 genomes]
rs55752011	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59144223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73823288	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73823289	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73823290	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73823292	1.00[AFR][1000 genomes]
rs73823293	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73823295	1.00[AMR][1000 genomes]
rs73823297	1.00[AMR][1000 genomes]
rs73823298	1.00[AMR][1000 genomes]
rs73823300	1.00[AMR][1000 genomes]
rs73823301	1.00[AMR][1000 genomes]
rs73825603	1.00[AMR][1000 genomes]
rs73825622	1.00[AMR][1000 genomes]
rs73825635	1.00[AMR][1000 genomes]
rs73825644	1.00[AMR][1000 genomes]
rs7674506	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461377	chr4:62368762-62883431	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594328	chr4:62368762-62883431	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1012574	chr4:62844264-62954187	Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv964718	chr4:62854394-62859644	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62824600-62877400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:62841200-62867000	Weak transcription	Aorta	Aorta
3	chr4:62843800-62859400	Weak transcription	Brain Anterior Caudate	brain
4	chr4:62846000-62859000	Weak transcription	Fetal Muscle Leg	muscle
5	chr4:62846800-62862600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:62850600-62877000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr4:62850800-62862000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:62857800-62858200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr4:62857800-62858200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr4:62857800-62858600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr4:62857800-62858600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr4:62857800-62858800	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr4:62857800-62859600	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr4:62858000-62858200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr4:62858000-62858200	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr4:62858000-62858200	Enhancers	Fetal Brain Female	brain
17	chr4:62858000-62858400	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr4:62858000-62859000	Enhancers	Fetal Brain Male	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links