Variant report

Variant	rs55773358
Chromosome Location	chr9:101762893-101762894
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:101762428..101763408-chr9:101902234..101903630,9	MCF-7	breast:
2	chr9:101610611..101611507-chr9:101762517..101763150,2	K562	blood:
3	chr9:101760174..101763909-chr9:101764160..101767138,3	K562	blood:
4	chr9:101762134..101763385-chr9:101902694..101903814,11	K562	blood:
5	chr9:101736882..101737407-chr9:101762143..101763138,2	MCF-7	breast:
6	chr9:101762797..101765082-chr9:101923950..101926109,2	MCF-7	breast:
7	chr9:101762316..101762978-chr9:101904959..101905498,2	MCF-7	breast:
8	chr9:101755503..101758615-chr9:101759001..101763298,4	K562	blood:
9	chr9:101762444..101763486-chr9:101902217..101903969,25	MCF-7	breast:
10	chr9:101762734..101763562-chr9:101904143..101904831,2	MCF-7	breast:
11	chr9:101759295..101764429-chr9:101866150..101870418,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000119514	Chromatin interaction
ENSG00000106799	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10988725	1.00[AMR][1000 genomes]
rs11568792	1.00[AMR][1000 genomes]
rs12003096	1.00[AMR][1000 genomes]
rs55839374	1.00[AMR][1000 genomes]
rs55925225	1.00[AMR][1000 genomes]
rs57927784	1.00[AMR][1000 genomes]
rs58938824	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61259934	1.00[AMR][1000 genomes]
rs73501993	1.00[AMR][1000 genomes]
rs73503706	1.00[AMR][1000 genomes]
rs73503714	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73503762	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6635	chr9:101728257-101773253	Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101757400-101763400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:101760200-101772800	Weak transcription	Aorta	Aorta
3	chr9:101760400-101763000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr9:101760400-101763000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr9:101760400-101767400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr9:101761000-101763600	Enhancers	Fetal Heart	heart
7	chr9:101761200-101763000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr9:101761200-101763000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr9:101761200-101763000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr9:101761200-101763000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr9:101761200-101763200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr9:101761200-101763800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr9:101761400-101763000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr9:101761400-101763000	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr9:101761400-101763400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr9:101761600-101763000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr9:101761600-101763000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr9:101761600-101763000	Weak transcription	Primary B cells from peripheral blood	blood
19	chr9:101761600-101763000	Weak transcription	Brain Hippocampus Middle	brain
20	chr9:101761600-101763200	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr9:101761600-101763400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr9:101761600-101763400	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr9:101761600-101767400	Weak transcription	Colonic Mucosa	Colon
24	chr9:101761600-101768400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr9:101761600-101770400	Weak transcription	Fetal Intestine Small	intestine
26	chr9:101761600-101814400	Weak transcription	Gastric	stomach
27	chr9:101761800-101763000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr9:101761800-101763000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr9:101761800-101763000	Weak transcription	Colon Smooth Muscle	Colon
30	chr9:101761800-101763000	Weak transcription	Osteobl	bone
31	chr9:101761800-101763200	Weak transcription	HSMMtube	muscle
32	chr9:101761800-101763200	Weak transcription	NHDF-Ad	bronchial
33	chr9:101761800-101763400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr9:101761800-101764000	Weak transcription	Hela-S3	cervix
35	chr9:101761800-101765200	Weak transcription	Fetal Stomach	stomach
36	chr9:101761800-101765400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr9:101761800-101765400	Weak transcription	Rectal Smooth Muscle	rectum
38	chr9:101761800-101765600	Weak transcription	Left Ventricle	heart
39	chr9:101761800-101765800	Weak transcription	Ovary	ovary
40	chr9:101761800-101765800	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr9:101761800-101768200	Weak transcription	Spleen	Spleen
42	chr9:101761800-101777800	Weak transcription	Pancreas	Pancrea
43	chr9:101761800-101785200	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr9:101762000-101763000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr9:101762200-101763000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr9:101762400-101764200	Weak transcription	NHLF	lung
47	chr9:101762600-101764000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
48	chr9:101762600-101764000	Genic enhancers	Placenta	Placenta
49	chr9:101762600-101769400	Strong transcription	Fetal Muscle Trunk	muscle
50	chr9:101762800-101763200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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