Variant report

Variant	rs73503714
Chromosome Location	chr9:101762298-101762299
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101760174..101763909-chr9:101764160..101767138,3	K562	blood:
2	chr9:101610013..101612448-chr9:101759740..101762487,2	MCF-7	breast:
3	chr9:101762134..101763385-chr9:101902694..101903814,11	K562	blood:
4	chr9:101736882..101737407-chr9:101762143..101763138,2	MCF-7	breast:
5	chr9:101755503..101758615-chr9:101759001..101763298,4	K562	blood:
6	chr9:101759295..101764429-chr9:101866150..101870418,5	K562	blood:

Variant related genes	Relation type
ENSG00000106799	Chromatin interaction
ENSG00000267026	Chromatin interaction
ENSG00000119514	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10988725	1.00[AMR][1000 genomes]
rs11568792	1.00[AMR][1000 genomes]
rs12003096	1.00[AMR][1000 genomes]
rs55773358	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55839374	1.00[AMR][1000 genomes]
rs55925225	1.00[AMR][1000 genomes]
rs57927784	1.00[AMR][1000 genomes]
rs58938824	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61259934	1.00[AMR][1000 genomes]
rs73501993	1.00[AMR][1000 genomes]
rs73503706	1.00[AMR][1000 genomes]
rs73503762	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6635	chr9:101728257-101773253	Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101757400-101763400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:101759600-101762600	Enhancers	Placenta	Placenta
3	chr9:101759800-101762400	Enhancers	NHLF	lung
4	chr9:101760200-101772800	Weak transcription	Aorta	Aorta
5	chr9:101760400-101763000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr9:101760400-101763000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr9:101760400-101767400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr9:101761000-101763600	Enhancers	Fetal Heart	heart
9	chr9:101761200-101763000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr9:101761200-101763000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr9:101761200-101763000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr9:101761200-101763000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr9:101761200-101763200	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr9:101761200-101763800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr9:101761400-101763000	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr9:101761400-101763000	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr9:101761400-101763400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr9:101761600-101762800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr9:101761600-101762800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr9:101761600-101762800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr9:101761600-101762800	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr9:101761600-101762800	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr9:101761600-101762800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr9:101761600-101762800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr9:101761600-101762800	Weak transcription	Stomach Mucosa	stomach
26	chr9:101761600-101762800	Weak transcription	HSMM	muscle
27	chr9:101761600-101762800	Weak transcription	K562	blood
28	chr9:101761600-101763000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr9:101761600-101763000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr9:101761600-101763000	Weak transcription	Primary B cells from peripheral blood	blood
31	chr9:101761600-101763000	Weak transcription	Brain Hippocampus Middle	brain
32	chr9:101761600-101763200	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr9:101761600-101763400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr9:101761600-101763400	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr9:101761600-101767400	Weak transcription	Colonic Mucosa	Colon
36	chr9:101761600-101768400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr9:101761600-101770400	Weak transcription	Fetal Intestine Small	intestine
38	chr9:101761600-101814400	Weak transcription	Gastric	stomach
39	chr9:101761800-101762800	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr9:101761800-101762800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr9:101761800-101762800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr9:101761800-101762800	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr9:101761800-101762800	Weak transcription	Fetal Muscle Leg	muscle
44	chr9:101761800-101762800	Weak transcription	Right Ventricle	heart
45	chr9:101761800-101763000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr9:101761800-101763000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr9:101761800-101763000	Weak transcription	Colon Smooth Muscle	Colon
48	chr9:101761800-101763000	Weak transcription	Osteobl	bone
49	chr9:101761800-101763200	Weak transcription	HSMMtube	muscle
50	chr9:101761800-101763200	Weak transcription	NHDF-Ad	bronchial

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