Variant report

Variant	rs73503762
Chromosome Location	chr9:101804503-101804504
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101803071..101805545-chr9:101877080..101878888,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10988725	1.00[AMR][1000 genomes]
rs11568792	1.00[AMR][1000 genomes]
rs12003096	1.00[AMR][1000 genomes]
rs55773358	1.00[AMR][1000 genomes]
rs55839374	1.00[AMR][1000 genomes]
rs55925225	1.00[AMR][1000 genomes]
rs57927784	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58938824	1.00[AMR][1000 genomes]
rs61259934	1.00[AMR][1000 genomes]
rs73501993	1.00[AMR][1000 genomes]
rs73503706	1.00[AMR][1000 genomes]
rs73503714	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466442	chr9:101788522-101816399	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv614954	chr9:101788522-101816399	Strong transcription Genic enhancers Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv893618	chr9:101800106-101886071	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101761600-101814400	Weak transcription	Gastric	stomach
2	chr9:101782000-101819800	Weak transcription	Colonic Mucosa	Colon
3	chr9:101787200-101806400	Weak transcription	Ovary	ovary
4	chr9:101789000-101812000	Weak transcription	Esophagus	oesophagus
5	chr9:101789200-101805400	Weak transcription	Right Ventricle	heart
6	chr9:101793800-101837600	Weak transcription	Psoas Muscle	Psoas
7	chr9:101796200-101806400	Strong transcription	Stomach Smooth Muscle	stomach
8	chr9:101798200-101811400	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr9:101798400-101819800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr9:101799000-101804600	Enhancers	HSMM	muscle
11	chr9:101799200-101814600	Weak transcription	Pancreas	Pancrea
12	chr9:101799400-101805200	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr9:101800200-101806800	Weak transcription	Rectal Smooth Muscle	rectum
14	chr9:101801600-101806200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr9:101801800-101804600	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr9:101802400-101809200	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr9:101803000-101805200	Weak transcription	Colon Smooth Muscle	Colon
18	chr9:101803200-101804600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr9:101803200-101805800	Genic enhancers	Adipose Nuclei	Adipose
20	chr9:101803400-101805400	Weak transcription	Left Ventricle	heart
21	chr9:101803600-101806400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr9:101803600-101806400	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr9:101804000-101805400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr9:101804000-101806000	Strong transcription	Fetal Muscle Leg	muscle
25	chr9:101804000-101806400	Strong transcription	Fetal Muscle Trunk	muscle
26	chr9:101804000-101809600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr9:101804000-101820000	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr9:101804200-101804800	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
29	chr9:101804200-101805200	Weak transcription	Fetal Stomach	stomach
30	chr9:101804200-101805400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr9:101804200-101805400	Weak transcription	Lung	lung
32	chr9:101804200-101806200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr9:101804200-101806400	Weak transcription	Hela-S3	cervix
34	chr9:101804200-101806800	Weak transcription	Primary B cells from cord blood	blood
35	chr9:101804200-101809400	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr9:101804400-101804800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr9:101804400-101804800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
38	chr9:101804400-101805600	Weak transcription	HSMMtube	muscle
39	chr9:101804400-101806000	Weak transcription	Placenta	Placenta
40	chr9:101804400-101806000	Weak transcription	NHDF-Ad	bronchial

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