Variant report
| Variant | rs55780220 |
|---|---|
| Chromosome Location | chr18:29872525-29872526 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:29850000-29877600 | Weak transcription | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
| 2 | chr18:29858600-29877600 | Weak transcription | Fetal Kidney | kidney |
| 3 | chr18:29861000-29876000 | Weak transcription | Small Intestine | intestine |
| 4 | chr18:29861600-29876800 | Weak transcription | Stomach Mucosa | stomach |
| 5 | chr18:29863200-29873000 | Weak transcription | Right Ventricle | heart |
| 6 | chr18:29863200-29877000 | Weak transcription | Fetal Heart | heart |
| 7 | chr18:29864400-29880800 | Weak transcription | Muscle Satellite Cultured Cells | -- |
| 8 | chr18:29864600-29881200 | Weak transcription | Colon Smooth Muscle | Colon |
| 9 | chr18:29865600-29873200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 10 | chr18:29867800-29873200 | Weak transcription | Skeletal Muscle Male | skeletal muscle |
| 11 | chr18:29867800-29877800 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
| 12 | chr18:29867800-29878000 | Weak transcription | Fetal Lung | lung |
| 13 | chr18:29867800-29880400 | Weak transcription | Aorta | Aorta |
| 14 | chr18:29867800-29881800 | Weak transcription | Duodenum Smooth Muscle | Duodenum |
| 15 | chr18:29868000-29872800 | Weak transcription | Brain Inferior Temporal Lobe | brain |
| 16 | chr18:29868000-29873000 | Weak transcription | Rectal Mucosa Donor 29 | rectum |
| 17 | chr18:29868000-29876200 | Weak transcription | Sigmoid Colon | Sigmoid Colon |
| 18 | chr18:29868000-29877600 | Weak transcription | Fetal Brain Female | brain |
| 19 | chr18:29868000-29877800 | Weak transcription | Duodenum Mucosa | Duodenum |
| 20 | chr18:29868000-29878000 | Weak transcription | Adipose Nuclei | Adipose |
| 21 | chr18:29868000-29878200 | Weak transcription | Brain Angular Gyrus | brain |
| 22 | chr18:29868000-29878200 | Weak transcription | Fetal Stomach | stomach |
| 23 | chr18:29868000-29888800 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
| 24 | chr18:29868000-29888800 | Weak transcription | Brain Hippocampus Middle | brain |
| 25 | chr18:29868000-29889000 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 26 | chr18:29868000-29889000 | Weak transcription | Rectal Mucosa Donor 31 | rectum |
| 27 | chr18:29868200-29873200 | Weak transcription | Stomach Smooth Muscle | stomach |
| 28 | chr18:29868200-29889800 | Weak transcription | Brain Cingulate Gyrus | brain |
| 29 | chr18:29868200-29923800 | Weak transcription | Gastric | stomach |
| 30 | chr18:29870000-29878000 | Weak transcription | Brain Anterior Caudate | brain |
| 31 | chr18:29871000-29876800 | Weak transcription | A549 | lung |
| 32 | chr18:29872400-29872600 | Enhancers | H1 Cell Line | embryonic stem cell |
| 33 | chr18:29872400-29872600 | ZNF genes & repeats | Liver | Liver |
| 34 | chr18:29872400-29873400 | Enhancers | Pancreas | Pancrea |
