Variant report

Variant	rs73956873
Chromosome Location	chr18:29883426-29883427
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:29877540..29879536-chr18:29882707..29884848,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs55780220	1.00[AFR][1000 genomes]
rs57638144	1.00[AFR][1000 genomes]
rs73956843	1.00[AFR][1000 genomes]
rs73956844	1.00[AFR][1000 genomes]
rs73956847	1.00[AFR][1000 genomes]
rs73956849	1.00[AFR][1000 genomes]
rs73956850	1.00[AFR][1000 genomes]
rs73956851	1.00[AFR][1000 genomes]
rs73956852	0.86[AFR][1000 genomes]
rs73956854	0.86[AFR][1000 genomes]
rs73956856	1.00[AFR][1000 genomes]
rs73956857	1.00[AFR][1000 genomes]
rs73956858	1.00[AFR][1000 genomes]
rs73956859	1.00[AFR][1000 genomes]
rs73956860	1.00[AFR][1000 genomes]
rs73956862	1.00[AFR][1000 genomes]
rs73956864	0.93[AFR][1000 genomes]
rs73956866	1.00[AFR][1000 genomes]
rs73956868	1.00[AFR][1000 genomes]
rs73956869	1.00[AFR][1000 genomes]
rs73956872	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056007	chr18:29711974-29899564	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv833616	chr18:29792336-29964212	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv528846	chr18:29832147-29890042	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29868000-29888800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr18:29868000-29888800	Weak transcription	Brain Hippocampus Middle	brain
3	chr18:29868000-29889000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr18:29868000-29889000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr18:29868200-29889800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr18:29868200-29923800	Weak transcription	Gastric	stomach
7	chr18:29878400-29888800	Weak transcription	Liver	Liver
8	chr18:29878400-29890000	Weak transcription	Fetal Kidney	kidney
9	chr18:29878400-29896000	Weak transcription	Brain Anterior Caudate	brain
10	chr18:29878600-29888000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr18:29878600-29890200	Weak transcription	Brain Angular Gyrus	brain
12	chr18:29878800-29890000	Weak transcription	Fetal Brain Male	brain
13	chr18:29880800-29897000	Weak transcription	Lung	lung
14	chr18:29881400-29883800	Enhancers	Fetal Heart	heart
15	chr18:29881600-29892200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr18:29881800-29888800	Weak transcription	Fetal Stomach	stomach
17	chr18:29882000-29888200	Weak transcription	HSMM	muscle
18	chr18:29882200-29888800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr18:29882200-29888800	Weak transcription	Rectal Smooth Muscle	rectum
20	chr18:29882200-29890000	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr18:29882600-29883600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr18:29882600-29883800	Enhancers	Aorta	Aorta
23	chr18:29882600-29883800	Enhancers	Right Atrium	heart
24	chr18:29882600-29888200	Weak transcription	NHEK	skin
25	chr18:29882800-29888200	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr18:29882800-29888600	Weak transcription	NH-A	brain
27	chr18:29882800-29888800	Weak transcription	Small Intestine	intestine
28	chr18:29882800-29889000	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr18:29882800-29890000	Weak transcription	Duodenum Mucosa	Duodenum
30	chr18:29883000-29883800	Enhancers	Right Ventricle	heart
31	chr18:29883000-29888000	Weak transcription	HMEC	breast
32	chr18:29883000-29888200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr18:29883000-29888400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr18:29883000-29888800	Weak transcription	HSMMtube	muscle
35	chr18:29883000-29890800	Weak transcription	Fetal Muscle Trunk	muscle
36	chr18:29883000-29891400	Weak transcription	Adipose Nuclei	Adipose
37	chr18:29883000-29891600	Weak transcription	Pancreas	Pancrea
38	chr18:29883000-29895800	Weak transcription	Stomach Mucosa	stomach
39	chr18:29883000-29897000	Weak transcription	Fetal Intestine Small	intestine
40	chr18:29883000-29897000	Weak transcription	Left Ventricle	heart
41	chr18:29883200-29883600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr18:29883200-29884000	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr18:29883200-29885800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr18:29883200-29888000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr18:29883200-29889000	Weak transcription	NHDF-Ad	bronchial
46	chr18:29883400-29885200	Weak transcription	Stomach Smooth Muscle	stomach
47	chr18:29883400-29888200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr18:29883400-29889000	Weak transcription	Fetal Muscle Leg	muscle
49	chr18:29883400-29896800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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