Variant report

Variant	rs73956850
Chromosome Location	chr18:29851573-29851574
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:29851378..29852356-chr18:30050569..30051553,4	MCF-7	breast:
2	chr18:29851159..29852631-chr18:30128814..30129900,6	MCF-7	breast:
3	chr18:29851409..29852190-chr18:30050752..30051380,2	MCF-7	breast:
4	chr18:29851552..29852413-chr18:30132133..30133147,4	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs55780220	1.00[AFR][1000 genomes]
rs57638144	1.00[AFR][1000 genomes]
rs73956843	1.00[AFR][1000 genomes]
rs73956844	1.00[AFR][1000 genomes]
rs73956847	1.00[AFR][1000 genomes]
rs73956849	1.00[AFR][1000 genomes]
rs73956851	1.00[AFR][1000 genomes]
rs73956852	0.86[AFR][1000 genomes]
rs73956854	0.86[AFR][1000 genomes]
rs73956856	1.00[AFR][1000 genomes]
rs73956857	1.00[AFR][1000 genomes]
rs73956858	1.00[AFR][1000 genomes]
rs73956859	1.00[AFR][1000 genomes]
rs73956860	1.00[AFR][1000 genomes]
rs73956862	1.00[AFR][1000 genomes]
rs73956864	0.93[AFR][1000 genomes]
rs73956866	1.00[AFR][1000 genomes]
rs73956868	1.00[AFR][1000 genomes]
rs73956869	1.00[AFR][1000 genomes]
rs73956872	1.00[AFR][1000 genomes]
rs73956873	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056007	chr18:29711974-29899564	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv833616	chr18:29792336-29964212	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv528846	chr18:29832147-29890042	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29835200-29861600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr18:29837400-29867200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr18:29838600-29851600	Weak transcription	Stomach Mucosa	stomach
4	chr18:29839800-29871800	Weak transcription	HSMMtube	muscle
5	chr18:29843000-29867000	Weak transcription	Brain Angular Gyrus	brain
6	chr18:29845200-29852000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr18:29845200-29857400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr18:29845400-29851800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr18:29846000-29867000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr18:29846400-29851600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr18:29846600-29851600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr18:29846600-29851600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr18:29847000-29856600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr18:29848000-29852200	Enhancers	Fetal Brain Male	brain
15	chr18:29848200-29852400	Enhancers	Fetal Brain Female	brain
16	chr18:29848200-29863600	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr18:29848400-29851800	Weak transcription	Fetal Heart	heart
18	chr18:29848400-29860200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr18:29848600-29857400	Weak transcription	HepG2	liver
20	chr18:29848600-29867200	Weak transcription	Lung	lung
21	chr18:29848800-29851800	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr18:29848800-29866600	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr18:29849400-29856800	Weak transcription	Right Ventricle	heart
24	chr18:29849400-29867000	Weak transcription	Esophagus	oesophagus
25	chr18:29849600-29852000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr18:29849800-29851600	Weak transcription	Fetal Kidney	kidney
27	chr18:29849800-29857400	Weak transcription	Brain Anterior Caudate	brain
28	chr18:29849800-29867000	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr18:29850000-29851600	Weak transcription	Fetal Intestine Large	intestine
30	chr18:29850000-29857000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr18:29850000-29860600	Weak transcription	Brain Substantia Nigra	brain
32	chr18:29850000-29877600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr18:29850200-29851600	Weak transcription	Colon Smooth Muscle	Colon
34	chr18:29850200-29851800	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr18:29850200-29856200	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr18:29850200-29856800	Weak transcription	Brain Hippocampus Middle	brain
37	chr18:29850200-29857000	Weak transcription	Adipose Nuclei	Adipose
38	chr18:29850200-29857400	Weak transcription	Brain Cingulate Gyrus	brain
39	chr18:29850200-29858400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr18:29850200-29866600	Weak transcription	Fetal Lung	lung
41	chr18:29850200-29867000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr18:29850200-29867000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr18:29850400-29851600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr18:29850400-29851600	Weak transcription	Aorta	Aorta
45	chr18:29850400-29851600	Weak transcription	Duodenum Mucosa	Duodenum
46	chr18:29850400-29851600	Weak transcription	Fetal Stomach	stomach
47	chr18:29850400-29851600	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr18:29850400-29851800	Weak transcription	Stomach Smooth Muscle	stomach
49	chr18:29850400-29852000	Weak transcription	Colonic Mucosa	Colon
50	chr18:29850400-29855200	Weak transcription	Rectal Mucosa Donor 31	rectum

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