Variant report

Variant	rs73956859
Chromosome Location	chr18:29864119-29864120
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs55780220	1.00[AFR][1000 genomes]
rs57638144	1.00[AFR][1000 genomes]
rs73956843	1.00[AFR][1000 genomes]
rs73956844	1.00[AFR][1000 genomes]
rs73956847	1.00[AFR][1000 genomes]
rs73956849	1.00[AFR][1000 genomes]
rs73956850	1.00[AFR][1000 genomes]
rs73956851	1.00[AFR][1000 genomes]
rs73956852	0.86[AFR][1000 genomes]
rs73956854	0.86[AFR][1000 genomes]
rs73956856	1.00[AFR][1000 genomes]
rs73956857	1.00[AFR][1000 genomes]
rs73956858	1.00[AFR][1000 genomes]
rs73956860	1.00[AFR][1000 genomes]
rs73956862	1.00[AFR][1000 genomes]
rs73956864	0.93[AFR][1000 genomes]
rs73956866	1.00[AFR][1000 genomes]
rs73956868	1.00[AFR][1000 genomes]
rs73956869	1.00[AFR][1000 genomes]
rs73956872	1.00[AFR][1000 genomes]
rs73956873	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056007	chr18:29711974-29899564	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv833616	chr18:29792336-29964212	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv528846	chr18:29832147-29890042	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29837400-29867200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr18:29839800-29871800	Weak transcription	HSMMtube	muscle
3	chr18:29843000-29867000	Weak transcription	Brain Angular Gyrus	brain
4	chr18:29846000-29867000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr18:29848600-29867200	Weak transcription	Lung	lung
6	chr18:29848800-29866600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr18:29849400-29867000	Weak transcription	Esophagus	oesophagus
8	chr18:29849800-29867000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr18:29850000-29877600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr18:29850200-29866600	Weak transcription	Fetal Lung	lung
11	chr18:29850200-29867000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr18:29850200-29867000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr18:29850400-29865800	Weak transcription	Fetal Muscle Trunk	muscle
14	chr18:29850400-29866600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr18:29850400-29867200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr18:29852200-29865000	Weak transcription	Fetal Stomach	stomach
17	chr18:29858200-29865000	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr18:29858600-29877600	Weak transcription	Fetal Kidney	kidney
19	chr18:29859000-29865200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr18:29859000-29866600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr18:29859000-29867600	Weak transcription	Colonic Mucosa	Colon
22	chr18:29859000-29870400	Weak transcription	HepG2	liver
23	chr18:29859400-29867200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr18:29860600-29867000	Weak transcription	Brain Anterior Caudate	brain
25	chr18:29860600-29867000	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr18:29860800-29865800	Weak transcription	Fetal Intestine Large	intestine
27	chr18:29861000-29865000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr18:29861000-29865000	Weak transcription	Fetal Intestine Small	intestine
29	chr18:29861000-29865200	Weak transcription	Adipose Nuclei	Adipose
30	chr18:29861000-29866600	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr18:29861000-29867200	Weak transcription	Gastric	stomach
32	chr18:29861000-29867400	Weak transcription	Duodenum Mucosa	Duodenum
33	chr18:29861000-29871000	Weak transcription	Rectal Smooth Muscle	rectum
34	chr18:29861000-29876000	Weak transcription	Small Intestine	intestine
35	chr18:29861200-29866200	Weak transcription	Ovary	ovary
36	chr18:29861200-29866400	Weak transcription	Fetal Muscle Leg	muscle
37	chr18:29861200-29866600	Weak transcription	Brain Cingulate Gyrus	brain
38	chr18:29861200-29866800	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr18:29861400-29865200	Weak transcription	Liver	Liver
40	chr18:29861400-29865400	Weak transcription	Pancreas	Pancrea
41	chr18:29861400-29866600	Weak transcription	Brain Substantia Nigra	brain
42	chr18:29861600-29869400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr18:29861600-29869800	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr18:29861600-29876800	Weak transcription	Stomach Mucosa	stomach
45	chr18:29862400-29865200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr18:29862400-29872400	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr18:29862600-29867600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr18:29863000-29864600	Enhancers	Colon Smooth Muscle	Colon
49	chr18:29863000-29865400	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr18:29863000-29869200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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