Variant report

Variant	rs55780908
Chromosome Location	chr1:185918397-185918398
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs56327694	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134210	1.00[AMR][1000 genomes]
rs74134211	1.00[AMR][1000 genomes]
rs74134213	1.00[AMR][1000 genomes]
rs74134214	1.00[AMR][1000 genomes]
rs74134216	1.00[AMR][1000 genomes]
rs74134221	1.00[AMR][1000 genomes]
rs74134222	1.00[AMR][1000 genomes]
rs74134224	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134225	1.00[AMR][1000 genomes]
rs74134226	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134228	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134229	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134230	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134232	1.00[AMR][1000 genomes]
rs74134233	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185895200-185932200	Weak transcription	Aorta	Aorta
2	chr1:185908600-185925200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:185913200-185921800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr1:185917400-185918600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr1:185917400-185921600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr1:185917400-185922200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr1:185917400-185923400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr1:185917600-185918800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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