Variant report

Variant	rs74134229
Chromosome Location	chr1:185928873-185928874
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs55780908	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56327694	1.00[AMR][1000 genomes]
rs74134210	1.00[AMR][1000 genomes]
rs74134211	1.00[AMR][1000 genomes]
rs74134213	1.00[AMR][1000 genomes]
rs74134214	1.00[AMR][1000 genomes]
rs74134216	1.00[AMR][1000 genomes]
rs74134221	1.00[AMR][1000 genomes]
rs74134222	1.00[AMR][1000 genomes]
rs74134224	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134225	1.00[AMR][1000 genomes]
rs74134226	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134228	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134230	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134232	1.00[AMR][1000 genomes]
rs74134233	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185895200-185932200	Weak transcription	Aorta	Aorta
2	chr1:185922800-185931200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr1:185923800-185929000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr1:185924200-185940800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr1:185925200-185931800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:185925800-185931800	Enhancers	NHDF-Ad	bronchial
7	chr1:185926800-185929600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:185926800-185929600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:185926800-185929600	Weak transcription	Fetal Lung	lung
10	chr1:185926800-185929800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr1:185926800-185933600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr1:185926800-185939000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr1:185927000-185929600	Weak transcription	Fetal Kidney	kidney
14	chr1:185927400-185929600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr1:185927600-185929400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr1:185927600-185938400	Weak transcription	Adipose Nuclei	Adipose
17	chr1:185928000-185933600	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr1:185928000-185933600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links