Variant report

Variant	rs74134232
Chromosome Location	chr1:185931432-185931433
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs55780908	1.00[AMR][1000 genomes]
rs56327694	1.00[AMR][1000 genomes]
rs74134210	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134211	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134213	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134214	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134216	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134221	1.00[AMR][1000 genomes]
rs74134222	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134224	1.00[AMR][1000 genomes]
rs74134225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134226	1.00[AMR][1000 genomes]
rs74134228	1.00[AMR][1000 genomes]
rs74134229	1.00[AMR][1000 genomes]
rs74134230	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185895200-185932200	Weak transcription	Aorta	Aorta
2	chr1:185924200-185940800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr1:185925200-185931800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:185925800-185931800	Enhancers	NHDF-Ad	bronchial
5	chr1:185926800-185933600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr1:185926800-185939000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr1:185927600-185938400	Weak transcription	Adipose Nuclei	Adipose
8	chr1:185928000-185933600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr1:185928000-185933600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr1:185929400-185933600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr1:185929600-185931600	Enhancers	NHLF	lung
12	chr1:185929600-185931800	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr1:185929600-185931800	Enhancers	Fetal Lung	lung
14	chr1:185930000-185935000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr1:185930200-185931600	Enhancers	HMEC	breast
16	chr1:185930400-185933600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr1:185930600-185938400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr1:185930600-185938400	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr1:185931200-185931800	Enhancers	Fetal Stomach	stomach
20	chr1:185931200-185933600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr1:185931200-185934800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr1:185931400-185933600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr1:185931400-185933600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr1:185931400-185933800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr1:185931400-185935200	Weak transcription	Fetal Kidney	kidney
26	chr1:185931400-185940800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr1:185931400-185940800	Weak transcription	Fetal Muscle Leg	muscle

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