Variant report

Variant	rs55781720
Chromosome Location	chr1:178988825-178988826
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12143004	0.82[AFR][1000 genomes]
rs16853610	0.94[EUR][1000 genomes]
rs2025580	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2147766	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2274228	0.94[AFR][1000 genomes]
rs4456058	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs45499094	0.89[AFR][1000 genomes]
rs55697941	0.82[EUR][1000 genomes]
rs56093002	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56107346	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7544822	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:178978600-178991000	Weak transcription	Aorta	Aorta
2	chr1:178978600-178991200	Weak transcription	Psoas Muscle	Psoas
3	chr1:178986400-178991000	Weak transcription	Gastric	stomach
4	chr1:178986400-178991200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr1:178986400-178994200	Weak transcription	Right Atrium	heart
6	chr1:178986400-178994200	Weak transcription	Spleen	Spleen
7	chr1:178986400-178994400	Weak transcription	Lung	lung
8	chr1:178986600-178989400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr1:178986600-178991000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr1:178986600-178991200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr1:178986600-178994000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr1:178986800-178991000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr1:178986800-178991200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr1:178986800-178994200	Weak transcription	Liver	Liver
15	chr1:178987000-178991000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr1:178987000-178991000	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr1:178987200-178989800	Enhancers	Stomach Mucosa	stomach
18	chr1:178987200-178990600	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr1:178987200-178990600	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr1:178987200-178991000	Weak transcription	Colon Smooth Muscle	Colon
21	chr1:178987200-178994200	Weak transcription	Fetal Lung	lung
22	chr1:178987400-178989000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr1:178987400-178989000	Weak transcription	Rectal Smooth Muscle	rectum
24	chr1:178987400-178990400	Weak transcription	Brain Angular Gyrus	brain
25	chr1:178987400-178990400	Weak transcription	A549	lung
26	chr1:178987400-178990400	Weak transcription	NHLF	lung
27	chr1:178987400-178990600	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr1:178987400-178990600	Weak transcription	Brain Cingulate Gyrus	brain
29	chr1:178987400-178990600	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr1:178987400-178990600	Weak transcription	Fetal Heart	heart
31	chr1:178987400-178990600	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr1:178987400-178990800	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr1:178987400-178991000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr1:178987400-178991000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr1:178987400-178991000	Weak transcription	Brain Anterior Caudate	brain
36	chr1:178987400-178991000	Weak transcription	Brain Hippocampus Middle	brain
37	chr1:178987400-178991000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr1:178987400-178991000	Weak transcription	Stomach Smooth Muscle	stomach
39	chr1:178987400-178991000	Weak transcription	HSMM	muscle
40	chr1:178987400-178991000	Weak transcription	HSMMtube	muscle
41	chr1:178987400-178991000	Weak transcription	Osteobl	bone
42	chr1:178987400-178991200	Weak transcription	Brain Substantia Nigra	brain
43	chr1:178987400-178994000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr1:178987400-178994200	Weak transcription	Left Ventricle	heart
45	chr1:178987400-178994400	Weak transcription	Fetal Stomach	stomach
46	chr1:178987600-178989000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr1:178987600-178989600	Enhancers	Fetal Intestine Small	intestine
48	chr1:178987600-178990400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr1:178987600-178990600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr1:178987600-178991000	Weak transcription	Fetal Muscle Leg	muscle

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