Variant report

Variant	rs56107346
Chromosome Location	chr1:178983635-178983636
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:178975112..178978831-chr1:178980259..178984628,4	MCF-7	breast:
2	chr1:178978287..178981942-chr1:178982197..178988679,6	K562	blood:
3	chr1:178979785..178981942-chr1:178983318..178985358,3	K562	blood:
4	chr1:178982170..178984787-chr1:178986294..178987843,2	K562	blood:
5	chr1:178974332..178978304-chr1:178979195..178983919,4	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16853610	0.94[EUR][1000 genomes]
rs2025580	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2147766	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2274228	0.89[AFR][1000 genomes]
rs4456058	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs45499094	0.85[AFR][1000 genomes]
rs55697941	0.82[EUR][1000 genomes]
rs55781720	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56093002	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7544822	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548275	chr1:178978409-178985658	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:178972400-178986000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:178977000-178985400	Weak transcription	A549	lung
3	chr1:178977000-178985600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr1:178978200-178984600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:178978200-178986000	Weak transcription	HepG2	liver
6	chr1:178978600-178986000	Weak transcription	Right Atrium	heart
7	chr1:178978600-178991000	Weak transcription	Aorta	Aorta
8	chr1:178978600-178991200	Weak transcription	Psoas Muscle	Psoas
9	chr1:178980400-178985600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr1:178981600-178985400	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr1:178981600-178985400	Weak transcription	Stomach Mucosa	stomach
12	chr1:178981800-178983800	Weak transcription	Stomach Smooth Muscle	stomach
13	chr1:178981800-178985000	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr1:178981800-178985600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:178981800-178985600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr1:178981800-178985600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr1:178981800-178985600	Weak transcription	Fetal Intestine Small	intestine
18	chr1:178981800-178986000	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr1:178982200-178985600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr1:178983200-178983800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr1:178983200-178985600	Enhancers	K562	blood
22	chr1:178983400-178984000	Enhancers	Adipose Nuclei	Adipose

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