Variant report

Variant	rs55697941
Chromosome Location	chr1:179037466-179037467
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179036822..179038443-chr1:179050586..179052326,2	MCF-7	breast:
2	chr1:179035309..179037468-chr1:179043936..179046736,2	K562	blood:

Variant related genes	Relation type
ENSG00000186283	Chromatin interaction

rs_ID	r²[population]
rs16853610	0.84[EUR][1000 genomes]
rs17361990	0.82[AMR][1000 genomes]
rs2025580	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2147766	0.82[EUR][1000 genomes]
rs2274228	0.82[AMR][1000 genomes]
rs2274230	0.82[AMR][1000 genomes]
rs28914488	1.00[AFR][1000 genomes]
rs3753532	0.82[AMR][1000 genomes]
rs4456058	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs45499094	0.82[AMR][1000 genomes]
rs55781720	0.82[EUR][1000 genomes]
rs56093002	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs56107346	0.82[EUR][1000 genomes]
rs7544822	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9724754	0.82[AMR][1000 genomes]

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179008400-179041000	Weak transcription	Small Intestine	intestine
2	chr1:179008600-179049800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr1:179008600-179049800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr1:179009600-179050400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:179025000-179050200	Weak transcription	HUVEC	blood vessel
6	chr1:179025400-179050600	Weak transcription	Fetal Brain Male	brain
7	chr1:179025600-179050000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr1:179025600-179050400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr1:179025800-179050200	Weak transcription	Fetal Heart	heart
10	chr1:179026200-179038400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr1:179027800-179042600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr1:179027800-179050600	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr1:179028000-179039000	Strong transcription	Primary T cells from cord blood	blood
14	chr1:179028600-179050000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr1:179028600-179050600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr1:179029200-179039600	Strong transcription	Fetal Intestine Large	intestine
17	chr1:179029600-179043200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr1:179030200-179038200	Strong transcription	Duodenum Mucosa	Duodenum
19	chr1:179030800-179038400	Strong transcription	Rectal Mucosa Donor 29	rectum
20	chr1:179031000-179038400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr1:179031200-179039600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr1:179031400-179038000	Strong transcription	K562	blood
23	chr1:179032400-179038400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr1:179032400-179039000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr1:179032600-179037600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr1:179032600-179038400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr1:179032600-179038400	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr1:179032600-179038400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr1:179032600-179043200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr1:179032600-179043200	Strong transcription	Fetal Muscle Trunk	muscle
31	chr1:179032800-179038200	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr1:179032800-179038400	Strong transcription	Placenta	Placenta
33	chr1:179032800-179039000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr1:179032800-179041600	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr1:179032800-179043600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr1:179033000-179038200	Strong transcription	A549	lung
37	chr1:179033000-179038400	Strong transcription	HUES6 Cell Line	embryonic stem cell
38	chr1:179033000-179038400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr1:179033000-179038400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr1:179033000-179038400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr1:179033000-179038400	Strong transcription	Liver	Liver
42	chr1:179033000-179038400	Strong transcription	Dnd41	blood
43	chr1:179033000-179038400	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr1:179033000-179038400	Strong transcription	Osteobl	bone
45	chr1:179033000-179038600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr1:179033000-179038600	Strong transcription	Cortex derived primary cultured neurospheres	brain
47	chr1:179033000-179038600	Strong transcription	Adipose Nuclei	Adipose
48	chr1:179033000-179038600	Strong transcription	Fetal Brain Female	brain
49	chr1:179033000-179038600	Strong transcription	Fetal Thymus	thymus
50	chr1:179033000-179038600	Strong transcription	Stomach Smooth Muscle	stomach

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