Variant report

Variant	rs56093002
Chromosome Location	chr1:179001641-179001642
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179000508..179002308-chr1:179026849..179029131,2	K562	blood:
2	chr1:179000401..179003914-chr1:179016181..179018558,5	K562	blood:

rs_ID	r²[population]
rs16853610	0.86[EUR][1000 genomes]
rs2025580	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2147766	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28914488	1.00[AFR][1000 genomes]
rs4456058	0.88[EUR][1000 genomes]
rs55697941	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs55781720	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56107346	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7544822	0.88[EUR][1000 genomes]

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:178996200-179003200	Weak transcription	Gastric	stomach
2	chr1:178996200-179009200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:178996400-179001800	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr1:178996400-179003200	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr1:178996400-179003200	Weak transcription	Esophagus	oesophagus
6	chr1:178996400-179006200	Weak transcription	Fetal Stomach	stomach
7	chr1:178996400-179011200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr1:178996600-179004000	Weak transcription	Fetal Kidney	kidney
9	chr1:178996800-179001800	Weak transcription	Fetal Muscle Leg	muscle
10	chr1:178996800-179002600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr1:178996800-179003000	Weak transcription	Right Ventricle	heart
12	chr1:178996800-179003200	Weak transcription	Thymus	Thymus
13	chr1:178997000-179003200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr1:178997000-179003200	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr1:178997000-179005800	Weak transcription	Brain Substantia Nigra	brain
16	chr1:178997200-179003200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr1:178997600-179002200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr1:178997600-179002200	Flanking Active TSS	GM12878-XiMat	blood
19	chr1:178997800-179001800	Enhancers	Duodenum Mucosa	Duodenum
20	chr1:178997800-179004800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr1:178998200-179002000	Enhancers	Adipose Nuclei	Adipose
22	chr1:178998200-179002200	Enhancers	NHEK	skin
23	chr1:178998200-179002400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr1:178998200-179002400	Enhancers	Fetal Heart	heart
25	chr1:178998200-179002600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr1:178998200-179004800	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr1:178998200-179004800	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr1:178998200-179008600	Enhancers	Colon Smooth Muscle	Colon
29	chr1:178998400-179002200	Enhancers	A549	lung
30	chr1:178998400-179003200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr1:178998400-179027400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr1:178998600-179002600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr1:178998600-179002800	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr1:178998600-179003200	Weak transcription	Brain Anterior Caudate	brain
35	chr1:178998600-179003200	Weak transcription	Spleen	Spleen
36	chr1:178998600-179003200	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr1:178998600-179004200	Weak transcription	Pancreas	Pancrea
38	chr1:178998600-179006000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr1:178998600-179007600	Weak transcription	Brain Cingulate Gyrus	brain
40	chr1:178998600-179008000	Weak transcription	Placenta	Placenta
41	chr1:178998800-179001800	Enhancers	Primary T helper naive cells from peripheral blood	blood
42	chr1:178998800-179002200	Weak transcription	Small Intestine	intestine
43	chr1:178998800-179002600	Enhancers	NHLF	lung
44	chr1:178998800-179003200	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr1:178998800-179003200	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr1:178998800-179003200	Weak transcription	Brain Hippocampus Middle	brain
47	chr1:178998800-179003200	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr1:178998800-179003600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr1:178998800-179005800	Weak transcription	Brain Angular Gyrus	brain
50	chr1:178999000-179003200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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