Variant report

Variant	rs557848149
Chromosome Location	chr9:15509611-15509612
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:15509318..15512022-chr9:15550389..15555494,9	MCF-7	breast:
2	chr9:15507256..15510187-chr9:15510704..15514473,5	K562	blood:

Variant related genes	Relation type
ENSG00000164989	Chromatin interaction
ENSG00000164985	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517975	chr9:15286446-15534070	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv892626	chr9:15389610-15694690	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv892628	chr9:15420805-15528290	Strong transcription Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	esv3440011	chr9:15509577-15512125	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15447000-15509800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr9:15460800-15510000	Weak transcription	Esophagus	oesophagus
3	chr9:15476600-15510000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr9:15485800-15509800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr9:15492600-15509800	Weak transcription	Colonic Mucosa	Colon
6	chr9:15493000-15509800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr9:15493000-15510000	Weak transcription	Gastric	stomach
8	chr9:15493000-15510000	Weak transcription	Lung	lung
9	chr9:15493000-15510000	Weak transcription	Pancreas	Pancrea
10	chr9:15493000-15510000	Weak transcription	Spleen	Spleen
11	chr9:15493400-15510000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:15494000-15510000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr9:15500400-15509800	Weak transcription	Psoas Muscle	Psoas
14	chr9:15500400-15510000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr9:15501000-15510000	Weak transcription	Stomach Mucosa	stomach
16	chr9:15506600-15509800	Weak transcription	Placenta	Placenta
17	chr9:15507400-15510000	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr9:15507600-15510200	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
19	chr9:15507800-15509800	Transcr. at gene 5' and 3'	HUES48 Cell Line	embryonic stem cell
20	chr9:15507800-15509800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
21	chr9:15507800-15510000	Transcr. at gene 5' and 3'	HUES64 Cell Line	embryonic stem cell
22	chr9:15507800-15510000	Transcr. at gene 5' and 3'	iPS-18 Cell Line	embryonic stem cell
23	chr9:15508000-15510000	Weak transcription	Left Ventricle	heart
24	chr9:15508200-15510000	Transcr. at gene 5' and 3'	H1 Cell Line	embryonic stem cell
25	chr9:15508200-15510200	Transcr. at gene 5' and 3'	Dnd41	blood
26	chr9:15508200-15511800	Active TSS	Brain Inferior Temporal Lobe	brain
27	chr9:15508400-15509800	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
28	chr9:15508400-15511400	Active TSS	Brain Cingulate Gyrus	brain
29	chr9:15508600-15509800	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr9:15508600-15513200	Active TSS	H9 Cell Line	embryonic stem cell
31	chr9:15508800-15509800	Enhancers	Primary B cells from peripheral blood	blood
32	chr9:15508800-15509800	Weak transcription	Fetal Intestine Large	intestine
33	chr9:15508800-15509800	Weak transcription	Fetal Muscle Trunk	muscle
34	chr9:15508800-15510000	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr9:15508800-15510000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
36	chr9:15508800-15510000	Flanking Active TSS	Brain Anterior Caudate	brain
37	chr9:15508800-15510000	Flanking Active TSS	Fetal Lung	lung
38	chr9:15508800-15511400	Active TSS	Brain Angular Gyrus	brain
39	chr9:15508800-15511800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
40	chr9:15509000-15509800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr9:15509000-15509800	Enhancers	Primary B cells from cord blood	blood
42	chr9:15509000-15509800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
43	chr9:15509000-15509800	Active TSS	Rectal Mucosa Donor 29	rectum
44	chr9:15509000-15509800	Enhancers	Small Intestine	intestine
45	chr9:15509000-15510200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr9:15509000-15510200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
47	chr9:15509000-15511400	Active TSS	GM12878-XiMat	blood
48	chr9:15509000-15511600	Active TSS	Right Atrium	heart
49	chr9:15509000-15511800	Active TSS	iPS-15b Cell Line	embryonic stem cell
50	chr9:15509200-15509800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived

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