Variant report

Variant	rs55807699
Chromosome Location	chr5:126395919-126395920
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:126395382..126398316-chr5:126401162..126402700,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11241915	1.00[ASN][1000 genomes]
rs17165220	1.00[ASN][1000 genomes]
rs17165223	0.95[ASN][1000 genomes]
rs17839706	1.00[ASN][1000 genomes]
rs2240529	0.89[ASN][1000 genomes]
rs2240530	0.81[ASN][1000 genomes]
rs55736801	1.00[ASN][1000 genomes]
rs55780389	0.89[ASN][1000 genomes]
rs55887767	0.89[ASN][1000 genomes]
rs55926617	0.89[ASN][1000 genomes]
rs55958512	0.89[ASN][1000 genomes]
rs56102558	0.89[ASN][1000 genomes]
rs57273792	0.89[ASN][1000 genomes]
rs57394214	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57448612	0.89[ASN][1000 genomes]
rs57496473	0.89[ASN][1000 genomes]
rs59022768	1.00[ASN][1000 genomes]
rs59255338	0.89[ASN][1000 genomes]
rs59584486	1.00[ASN][1000 genomes]
rs59722252	0.89[ASN][1000 genomes]
rs60381307	1.00[ASN][1000 genomes]
rs60503756	0.86[ASN][1000 genomes]
rs61137046	0.89[ASN][1000 genomes]
rs61563447	0.89[ASN][1000 genomes]
rs61563838	1.00[ASN][1000 genomes]
rs73783494	0.89[ASN][1000 genomes]
rs73783499	0.89[ASN][1000 genomes]
rs73783500	0.89[ASN][1000 genomes]
rs73783511	0.89[ASN][1000 genomes]
rs73783517	1.00[ASN][1000 genomes]
rs73783518	1.00[ASN][1000 genomes]
rs73783519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73783522	1.00[ASN][1000 genomes]
rs73786208	0.89[ASN][1000 genomes]
rs73786211	0.89[ASN][1000 genomes]
rs73786236	0.89[ASN][1000 genomes]
rs73786237	0.89[ASN][1000 genomes]
rs73786243	0.89[ASN][1000 genomes]
rs73786248	0.89[ASN][1000 genomes]
rs73786254	0.89[ASN][1000 genomes]
rs73786256	0.89[ASN][1000 genomes]
rs73786257	0.89[ASN][1000 genomes]
rs73786289	0.89[ASN][1000 genomes]
rs73786297	0.89[ASN][1000 genomes]
rs73786300	0.89[ASN][1000 genomes]
rs73786301	0.89[ASN][1000 genomes]
rs73786302	0.89[ASN][1000 genomes]
rs73787405	0.89[ASN][1000 genomes]
rs73787409	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024265	chr5:126213004-126691163	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv869897	chr5:126224358-126445210	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126374600-126408400	Weak transcription	Psoas Muscle	Psoas
2	chr5:126377200-126400000	Weak transcription	Gastric	stomach
3	chr5:126377200-126401400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr5:126377200-126409000	Weak transcription	Spleen	Spleen
5	chr5:126377400-126403800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr5:126377400-126404600	Weak transcription	Left Ventricle	heart
7	chr5:126377400-126408400	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr5:126378000-126408000	Weak transcription	Fetal Intestine Small	intestine
9	chr5:126378000-126408400	Weak transcription	Right Ventricle	heart
10	chr5:126378200-126408200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr5:126378400-126408000	Weak transcription	HMEC	breast
12	chr5:126379200-126404800	Weak transcription	Brain Germinal Matrix	brain
13	chr5:126379400-126404600	Weak transcription	Fetal Heart	heart
14	chr5:126380400-126408000	Weak transcription	HepG2	liver
15	chr5:126381000-126397800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr5:126381400-126408400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr5:126381600-126396600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr5:126382400-126408600	Weak transcription	Fetal Muscle Trunk	muscle
19	chr5:126386000-126406400	Weak transcription	Adipose Nuclei	Adipose
20	chr5:126388000-126408000	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr5:126388200-126404400	Weak transcription	HSMM	muscle
22	chr5:126388600-126408400	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr5:126388800-126406400	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr5:126389000-126396000	Weak transcription	Osteobl	bone
25	chr5:126389000-126400200	Weak transcription	Brain Substantia Nigra	brain
26	chr5:126389000-126408400	Weak transcription	Thymus	Thymus
27	chr5:126390200-126408400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr5:126391400-126408200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr5:126391600-126408200	Weak transcription	A549	lung
30	chr5:126392000-126404400	Weak transcription	NH-A	brain
31	chr5:126392000-126408200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr5:126392000-126408200	Weak transcription	Fetal Kidney	kidney
33	chr5:126392000-126408200	Weak transcription	NHEK	skin
34	chr5:126392000-126408400	Weak transcription	Fetal Brain Female	brain
35	chr5:126392000-126408400	Weak transcription	HSMMtube	muscle
36	chr5:126392200-126408400	Weak transcription	Fetal Stomach	stomach
37	chr5:126392200-126408600	Weak transcription	Lung	lung
38	chr5:126392400-126398800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr5:126392400-126408000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr5:126392400-126408400	Weak transcription	Primary hematopoietic stem cells	blood
41	chr5:126392400-126408400	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr5:126392400-126408400	Weak transcription	Pancreas	Pancrea
43	chr5:126392400-126408400	Weak transcription	Stomach Smooth Muscle	stomach
44	chr5:126392400-126408600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr5:126392400-126408600	Weak transcription	Ovary	ovary
46	chr5:126392400-126408600	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr5:126392600-126408000	Weak transcription	Liver	Liver
48	chr5:126392600-126408400	Weak transcription	Fetal Thymus	thymus
49	chr5:126392800-126396600	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr5:126392800-126405200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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