Variant report

Variant	rs60503756
Chromosome Location	chr5:126381328-126381329
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MARCH3-3	chr5:126381051-126383607	NONHSAT103607

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11241915	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12659633	0.93[AFR][1000 genomes]
rs17165220	0.86[ASN][1000 genomes]
rs17165223	0.81[ASN][1000 genomes]
rs17839706	0.86[ASN][1000 genomes]
rs55736801	0.86[ASN][1000 genomes]
rs55807699	0.86[ASN][1000 genomes]
rs56124224	0.93[AFR][1000 genomes]
rs57394214	0.86[ASN][1000 genomes]
rs58164143	0.92[AFR][1000 genomes]
rs59022768	0.86[ASN][1000 genomes]
rs59584486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs60381307	0.86[ASN][1000 genomes]
rs61563838	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6872893	0.93[AFR][1000 genomes]
rs6877692	0.93[AFR][1000 genomes]
rs6882025	0.93[AFR][1000 genomes]
rs73783511	0.87[AMR][1000 genomes]
rs73783517	0.86[ASN][1000 genomes]
rs73783518	0.86[ASN][1000 genomes]
rs73783519	0.86[ASN][1000 genomes]
rs73783522	0.86[ASN][1000 genomes]
rs9918233	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024265	chr5:126213004-126691163	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv869897	chr5:126224358-126445210	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126367600-126382000	Weak transcription	Primary B cells from cord blood	blood
2	chr5:126367600-126391800	Weak transcription	GM12878-XiMat	blood
3	chr5:126368000-126387200	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr5:126372200-126391600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr5:126374400-126385000	Weak transcription	Small Intestine	intestine
6	chr5:126374600-126408400	Weak transcription	Psoas Muscle	Psoas
7	chr5:126376000-126391800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr5:126377200-126387200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr5:126377200-126391600	Weak transcription	Fetal Stomach	stomach
10	chr5:126377200-126391800	Weak transcription	Fetal Muscle Leg	muscle
11	chr5:126377200-126395200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr5:126377200-126400000	Weak transcription	Gastric	stomach
13	chr5:126377200-126401400	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr5:126377200-126409000	Weak transcription	Spleen	Spleen
15	chr5:126377400-126382000	Weak transcription	Duodenum Mucosa	Duodenum
16	chr5:126377400-126382000	Weak transcription	Fetal Intestine Large	intestine
17	chr5:126377400-126382400	Weak transcription	Primary B cells from peripheral blood	blood
18	chr5:126377400-126391600	Weak transcription	Pancreas	Pancrea
19	chr5:126377400-126395800	Weak transcription	Colonic Mucosa	Colon
20	chr5:126377400-126403800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr5:126377400-126404600	Weak transcription	Left Ventricle	heart
22	chr5:126377400-126408400	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr5:126377600-126391600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr5:126378000-126391800	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr5:126378000-126408000	Weak transcription	Fetal Intestine Small	intestine
26	chr5:126378000-126408400	Weak transcription	Right Ventricle	heart
27	chr5:126378200-126382200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr5:126378200-126382200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr5:126378200-126382400	Weak transcription	Aorta	Aorta
30	chr5:126378200-126383000	Weak transcription	Stomach Mucosa	stomach
31	chr5:126378200-126384000	Weak transcription	K562	blood
32	chr5:126378200-126387600	Weak transcription	HSMM	muscle
33	chr5:126378200-126391200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr5:126378200-126408200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr5:126378400-126386200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr5:126378400-126408000	Weak transcription	HMEC	breast
37	chr5:126378800-126392600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr5:126379000-126382800	Strong transcription	Primary T cells from cord blood	blood
39	chr5:126379200-126404800	Weak transcription	Brain Germinal Matrix	brain
40	chr5:126379400-126388400	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr5:126379400-126391000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr5:126379400-126404600	Weak transcription	Fetal Heart	heart
43	chr5:126380200-126391600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr5:126380200-126391800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr5:126380200-126391800	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr5:126380400-126382600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr5:126380400-126408000	Weak transcription	HepG2	liver
48	chr5:126380600-126387800	Weak transcription	Thymus	Thymus
49	chr5:126380600-126391600	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr5:126380800-126391800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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