Variant report

Variant rs6877692
Chromosome Location chr5:126376954-126376955
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:68 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:126367600-126382000 Weak transcription Primary B cells from cord blood blood
2 chr5:126367600-126391800 Weak transcription GM12878-XiMat blood
3 chr5:126368000-126387200 Weak transcription Primary T helper cells PMA-I stimulated --
4 chr5:126370200-126379000 Weak transcription Primary T cells from cord blood blood
5 chr5:126372200-126391600 Weak transcription Primary hematopoietic stem cells blood
6 chr5:126374400-126385000 Weak transcription Small Intestine intestine
7 chr5:126374600-126408400 Weak transcription Psoas Muscle Psoas
8 chr5:126375600-126377400 Enhancers H9 Cell Line embryonic stem cell
9 chr5:126375800-126377400 Enhancers Fetal Intestine Large intestine
10 chr5:126375800-126377600 Enhancers H1 Cell Line embryonic stem cell
11 chr5:126375800-126378000 Enhancers Fetal Intestine Small intestine
12 chr5:126375800-126378400 Enhancers HMEC breast
13 chr5:126376000-126377000 Weak transcription Colonic Mucosa Colon
14 chr5:126376000-126377400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
15 chr5:126376000-126377400 Enhancers Left Ventricle heart
16 chr5:126376000-126378000 Enhancers ES-UCSF4 Cell Line embryonic stem cell
17 chr5:126376000-126391800 Weak transcription Sigmoid Colon Sigmoid Colon
18 chr5:126376200-126377400 Enhancers Cortex derived primary cultured neurospheres brain
19 chr5:126376200-126377400 Flanking Active TSS Duodenum Mucosa Duodenum
20 chr5:126376200-126377800 Enhancers Fetal Heart heart
21 chr5:126376200-126378000 Enhancers Lung lung
22 chr5:126376200-126378400 Enhancers Muscle Satellite Cultured Cells --
23 chr5:126376200-126378800 Enhancers iPS-18 Cell Line embryonic stem cell
24 chr5:126376400-126377000 Active TSS Rectal Mucosa Donor 31 rectum
25 chr5:126376400-126377200 Flanking Active TSS ES-I3 Cell Line embryonic stem cell
26 chr5:126376400-126377200 Flanking Active TSS iPS-15b Cell Line embryonic stem cell
27 chr5:126376400-126377200 Enhancers Skeletal Muscle Female skeletal muscle
28 chr5:126376400-126378000 Enhancers Brain Anterior Caudate brain
29 chr5:126376400-126378200 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
30 chr5:126376400-126378200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
31 chr5:126376400-126378200 Enhancers K562 blood
32 chr5:126376400-126378800 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
33 chr5:126376600-126377000 Active TSS HUES64 Cell Line embryonic stem cell
34 chr5:126376600-126377000 Flanking Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
35 chr5:126376600-126377000 Enhancers Brain Substantia Nigra brain
36 chr5:126376600-126377000 Active TSS Rectal Mucosa Donor 29 rectum
37 chr5:126376600-126377000 Flanking Active TSS NHLF lung
38 chr5:126376600-126377000 Active TSS Osteobl bone
39 chr5:126376600-126377200 Enhancers Fetal Muscle Leg muscle
40 chr5:126376600-126377200 Enhancers Spleen Spleen
41 chr5:126376600-126377200 Enhancers Hela-S3 cervix
42 chr5:126376600-126377400 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
43 chr5:126376600-126377400 Flanking Active TSS HUES6 Cell Line embryonic stem cell
44 chr5:126376600-126377400 Enhancers Fetal Adrenal Gland Adrenal Gland
45 chr5:126376600-126377400 Enhancers Pancreas Pancrea
46 chr5:126376600-126377400 Enhancers Skeletal Muscle Male skeletal muscle
47 chr5:126376600-126377400 Flanking Active TSS HUVEC blood vessel
48 chr5:126376600-126377600 Enhancers Breast Myoepithelial Primary Cells Breast
49 chr5:126376600-126378000 Enhancers Right Ventricle heart
50 chr5:126376600-126378200 Enhancers iPS DF 6.9 Cell Line embryonic stem cell

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