Variant report

Variant	rs57833976
Chromosome Location	chr5:126319514-126319515
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:126313681..126317112-chr5:126318689..126323055,6	K562	blood:
2	chr5:126317999..126320558-chr5:126321951..126325024,3	K562	blood:
3	chr5:126318646..126322262-chr5:126365005..126368351,4	K562	blood:
4	chr5:126317258..126320149-chr5:126332134..126334616,2	K562	blood:
5	chr5:126313193..126316253-chr5:126318541..126320305,3	K562	blood:
6	chr5:126317060..126319514-chr5:126359068..126361559,2	K562	blood:
7	chr5:126318646..126324314-chr5:126364325..126368351,7	K562	blood:

No data

Variant related genes	Relation type
ENSG00000173926	Chromatin interaction

Extended variants
information (count: 210 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:208)

rs_ID	r²[population]
rs10040840	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10075097	0.82[ASN][1000 genomes]
rs10519919	1.00[EUR][1000 genomes]
rs10519920	0.82[ASN][1000 genomes]
rs10519922	1.00[EUR][1000 genomes]
rs10519923	1.00[EUR][1000 genomes]
rs12518420	1.00[EUR][1000 genomes]
rs12651864	1.00[EUR][1000 genomes]
rs12652390	1.00[EUR][1000 genomes]
rs12652417	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12653000	1.00[EUR][1000 genomes]
rs12653290	1.00[EUR][1000 genomes]
rs12653444	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12653823	0.82[ASN][1000 genomes]
rs12654717	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12654725	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12654808	0.82[EUR][1000 genomes]
rs12655006	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12655199	1.00[EUR][1000 genomes]
rs12655223	0.82[EUR][1000 genomes]
rs12655258	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12655319	1.00[EUR][1000 genomes]
rs12655435	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12655605	1.00[EUR][1000 genomes]
rs12655699	0.82[ASN][1000 genomes]
rs12655726	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12655928	1.00[EUR][1000 genomes]
rs12655991	0.82[EUR][1000 genomes]
rs12656223	0.86[ASN][1000 genomes]
rs12656236	1.00[EUR][1000 genomes]
rs12656537	1.00[EUR][1000 genomes]
rs12656837	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12658138	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12658174	0.82[EUR][1000 genomes]
rs12658599	1.00[EUR][1000 genomes]
rs12658608	0.84[EUR][1000 genomes]
rs12658816	1.00[EUR][1000 genomes]
rs12658821	1.00[EUR][1000 genomes]
rs12658822	0.82[EUR][1000 genomes]
rs12659476	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12659607	1.00[EUR][1000 genomes]
rs12659614	1.00[EUR][1000 genomes]
rs12659633	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17165192	1.00[EUR][1000 genomes]
rs17165194	1.00[EUR][1000 genomes]
rs17165211	1.00[EUR][1000 genomes]
rs17165228	1.00[EUR][1000 genomes]
rs17165234	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17165236	0.82[ASN][1000 genomes]
rs17165239	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17165244	0.82[ASN][1000 genomes]
rs17165248	0.82[ASN][1000 genomes]
rs17165249	1.00[EUR][1000 genomes]
rs17165251	0.82[ASN][1000 genomes]
rs34416835	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34738240	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35566904	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35627668	1.00[EUR][1000 genomes]
rs36091921	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3812061	0.82[EUR][1000 genomes]
rs4141169	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4141170	0.82[ASN][1000 genomes]
rs55792418	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55802546	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56073877	0.82[ASN][1000 genomes]
rs56094173	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56122855	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56124224	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56272610	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56279346	0.80[ASN][1000 genomes]
rs56688052	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56689722	1.00[EUR][1000 genomes]
rs56786115	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57031083	0.82[EUR][1000 genomes]
rs57032367	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57052202	1.00[EUR][1000 genomes]
rs57081850	1.00[EUR][1000 genomes]
rs57113926	0.82[EUR][1000 genomes]
rs57285842	0.82[ASN][1000 genomes]
rs57485054	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57627287	1.00[EUR][1000 genomes]
rs57700815	1.00[EUR][1000 genomes]
rs57906418	0.92[EUR][1000 genomes]
rs57915728	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58030771	0.82[ASN][1000 genomes]
rs58164143	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58249730	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58262537	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58527455	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58646561	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58754116	0.82[ASN][1000 genomes]
rs58838495	0.82[EUR][1000 genomes]
rs58894799	1.00[EUR][1000 genomes]
rs59459356	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59489123	1.00[EUR][1000 genomes]
rs59643871	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59676931	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59770843	0.82[ASN][1000 genomes]
rs59814275	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60045571	0.82[EUR][1000 genomes]
rs60138815	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60244211	0.82[EUR][1000 genomes]
rs60615137	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60636815	1.00[EUR][1000 genomes]
rs60781824	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60889784	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60892581	0.81[ASN][1000 genomes]
rs61031864	1.00[EUR][1000 genomes]
rs61258380	1.00[EUR][1000 genomes]
rs61279308	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61463824	0.82[EUR][1000 genomes]
rs61496590	0.82[EUR][1000 genomes]
rs61544197	0.82[ASN][1000 genomes]
rs61653213	1.00[EUR][1000 genomes]
rs61679093	0.82[ASN][1000 genomes]
rs61685918	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61697996	0.82[ASN][1000 genomes]
rs6595747	0.86[ASN][1000 genomes]
rs6860581	0.86[ASN][1000 genomes]
rs6862462	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6864607	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6872893	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6877692	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6882025	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6883181	1.00[EUR][1000 genomes]
rs6886131	0.86[ASN][1000 genomes]
rs6888532	1.00[EUR][1000 genomes]
rs6892168	0.86[ASN][1000 genomes]
rs6893763	1.00[EUR][1000 genomes]
rs6899030	1.00[EUR][1000 genomes]
rs72505648	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73335426	0.82[EUR][1000 genomes]
rs73335444	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73335447	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73335461	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73335474	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73335490	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73335494	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73335498	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73335501	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73337225	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73337229	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73337233	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73337299	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73339248	0.86[ASN][1000 genomes]
rs73339251	0.82[ASN][1000 genomes]
rs73339283	0.82[ASN][1000 genomes]
rs73339293	0.82[ASN][1000 genomes]
rs73783476	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73783496	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73783501	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73783503	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73783504	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73783506	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73783507	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73783529	0.82[ASN][1000 genomes]
rs73786207	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73786209	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73786212	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73786239	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73786240	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73786241	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73786242	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73786244	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73786246	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73786247	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73786249	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73786250	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73786251	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73786252	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73786253	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73786255	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73786259	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73786260	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73786261	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73786262	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73786264	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73786265	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73786266	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73786267	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73786268	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73786269	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73786270	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73786271	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73786272	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73786276	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786277	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786278	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786280	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786281	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786282	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786283	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786284	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786285	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786287	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786288	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786290	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786294	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786295	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786298	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73787403	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73787404	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73787406	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7701976	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7709865	0.96[ASN][1000 genomes]
rs7715377	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7727719	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9918233	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024265	chr5:126213004-126691163	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv869897	chr5:126224358-126445210	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126308400-126328800	Weak transcription	Gastric	stomach
2	chr5:126309000-126331000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr5:126309000-126331600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:126309400-126323000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr5:126309400-126323200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr5:126309400-126323200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr5:126309400-126334000	Weak transcription	Small Intestine	intestine
8	chr5:126310000-126323400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr5:126312200-126320600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr5:126312600-126323400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr5:126312800-126320600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr5:126312800-126322800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr5:126312800-126331600	Weak transcription	HSMM	muscle
14	chr5:126314400-126323400	Enhancers	Primary B cells from peripheral blood	blood
15	chr5:126315000-126320000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr5:126315200-126319600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr5:126315200-126320000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr5:126315200-126320600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr5:126315400-126319800	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr5:126316800-126320600	Enhancers	Fetal Muscle Leg	muscle
21	chr5:126316800-126321800	Enhancers	K562	blood
22	chr5:126317600-126321000	Enhancers	Left Ventricle	heart
23	chr5:126317800-126320000	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr5:126317800-126320200	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr5:126317800-126320800	Enhancers	Fetal Muscle Trunk	muscle
26	chr5:126317800-126320800	Enhancers	Psoas Muscle	Psoas
27	chr5:126318000-126319800	Enhancers	Primary B cells from cord blood	blood
28	chr5:126318000-126320200	Enhancers	Right Atrium	heart
29	chr5:126318200-126319800	Enhancers	Brain Hippocampus Middle	brain
30	chr5:126318400-126320200	Flanking Active TSS	Fetal Heart	heart
31	chr5:126318600-126322400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr5:126318800-126319600	Enhancers	HSMMtube	muscle
33	chr5:126318800-126320800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr5:126318800-126323000	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr5:126318800-126323800	Weak transcription	HepG2	liver
36	chr5:126319000-126320000	Enhancers	Spleen	Spleen
37	chr5:126319200-126319600	Weak transcription	Right Ventricle	heart
38	chr5:126319200-126320800	Enhancers	Primary hematopoietic stem cells short term culture	blood
39	chr5:126319200-126322400	Weak transcription	Adipose Nuclei	Adipose
40	chr5:126319400-126322800	Weak transcription	Primary T helper cells fromperipheralblood	blood

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