Variant report

Variant	rs56122855
Chromosome Location	chr5:126297926-126297927
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:126295423..126298224-chr5:126364699..126366232,2	K562	blood:
2	chr5:126294787..126301080-chr5:126303359..126308773,11	K562	blood:
3	chr5:126295165..126298889-chr5:126304910..126308773,5	K562	blood:

Variant related genes	Relation type
ENSG00000173926	Chromatin interaction

Extended variants
information (count: 175 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:173)

rs_ID	r²[population]
rs10040840	0.89[ASN][1000 genomes]
rs10519919	0.92[EUR][1000 genomes]
rs10519922	0.92[EUR][1000 genomes]
rs10519923	0.92[EUR][1000 genomes]
rs12518420	0.92[EUR][1000 genomes]
rs12651864	0.92[EUR][1000 genomes]
rs12652390	0.92[EUR][1000 genomes]
rs12652417	0.94[AFR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12653000	0.92[EUR][1000 genomes]
rs12653290	0.92[EUR][1000 genomes]
rs12653444	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12654717	0.94[AFR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12654725	0.94[AFR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12655006	0.92[EUR][1000 genomes]
rs12655199	0.92[EUR][1000 genomes]
rs12655258	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12655319	0.92[EUR][1000 genomes]
rs12655435	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12655605	0.92[EUR][1000 genomes]
rs12655726	0.92[EUR][1000 genomes]
rs12655928	0.92[EUR][1000 genomes]
rs12656223	0.83[ASN][1000 genomes]
rs12656236	0.92[EUR][1000 genomes]
rs12656537	0.92[EUR][1000 genomes]
rs12656837	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12658138	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12658599	0.92[EUR][1000 genomes]
rs12658816	0.92[EUR][1000 genomes]
rs12658821	0.92[EUR][1000 genomes]
rs12659476	0.94[AFR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12659607	0.92[EUR][1000 genomes]
rs12659614	0.92[EUR][1000 genomes]
rs12659633	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17165192	0.92[EUR][1000 genomes]
rs17165194	0.92[EUR][1000 genomes]
rs17165211	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17165228	0.92[EUR][1000 genomes]
rs17165234	0.92[EUR][1000 genomes]
rs17165239	0.92[EUR][1000 genomes]
rs17165249	0.92[EUR][1000 genomes]
rs34416835	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34738240	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35566904	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35627668	0.92[EUR][1000 genomes]
rs36091921	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4141169	0.92[EUR][1000 genomes]
rs55780389	0.85[AFR][1000 genomes]
rs55792418	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55802546	0.94[AFR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56094173	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56124224	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56272610	0.94[AFR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56688052	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56689722	0.92[EUR][1000 genomes]
rs56786115	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57032367	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57052202	0.92[EUR][1000 genomes]
rs57081850	0.92[EUR][1000 genomes]
rs57485054	0.89[ASN][1000 genomes]
rs57627287	0.92[EUR][1000 genomes]
rs57700815	0.92[EUR][1000 genomes]
rs57833976	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57906418	0.84[EUR][1000 genomes]
rs57915728	0.94[AFR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58164143	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58249730	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58262537	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58527455	0.94[AFR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58646561	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58894799	0.92[EUR][1000 genomes]
rs59459356	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59489123	0.92[EUR][1000 genomes]
rs59643871	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59676931	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59814275	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60138815	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60615137	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60636815	0.92[EUR][1000 genomes]
rs60781824	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60889784	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61031864	0.92[EUR][1000 genomes]
rs61258380	0.92[EUR][1000 genomes]
rs61279308	0.94[AFR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61653213	0.92[EUR][1000 genomes]
rs61685918	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6595747	0.83[ASN][1000 genomes]
rs6860581	0.83[ASN][1000 genomes]
rs6862462	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6864607	0.89[ASN][1000 genomes]
rs6872893	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6877692	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6882025	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6883181	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6886131	0.83[ASN][1000 genomes]
rs6888532	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6892168	0.83[ASN][1000 genomes]
rs6893763	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6899030	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72505648	0.89[ASN][1000 genomes]
rs73335444	0.89[ASN][1000 genomes]
rs73335447	0.89[ASN][1000 genomes]
rs73335461	0.89[ASN][1000 genomes]
rs73335474	0.89[ASN][1000 genomes]
rs73335490	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73335494	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73335498	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73335501	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73337225	0.93[ASN][1000 genomes]
rs73337229	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73337233	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73337299	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73339248	0.83[ASN][1000 genomes]
rs73783476	0.89[ASN][1000 genomes]
rs73783496	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73783501	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73783503	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73783504	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73783506	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73783507	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73786207	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786209	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786212	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786239	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786240	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786241	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786242	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786244	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786246	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786247	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786249	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786250	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786251	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786252	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786253	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786255	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786259	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786260	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786261	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786262	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786264	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786265	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786266	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786267	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786268	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786269	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786270	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786271	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786272	0.96[AFR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73786276	0.94[AFR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73786277	0.94[AFR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73786278	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73786280	0.94[AFR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73786281	0.94[AFR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73786282	0.94[AFR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73786283	0.94[AFR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73786284	0.94[AFR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73786285	0.94[AFR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73786287	0.94[AFR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73786288	0.94[AFR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73786290	0.94[AFR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73786294	0.94[AFR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73786295	0.94[AFR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73786297	0.85[AFR][1000 genomes]
rs73786298	0.94[AFR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73786300	0.85[AFR][1000 genomes]
rs73787403	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73787404	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73787406	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7701976	0.89[ASN][1000 genomes]
rs7709865	0.93[ASN][1000 genomes]
rs7715377	0.89[ASN][1000 genomes]
rs7727719	0.88[ASN][1000 genomes]
rs9918233	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024265	chr5:126213004-126691163	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv869897	chr5:126224358-126445210	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126253600-126300400	Weak transcription	Primary B cells from cord blood	blood
2	chr5:126275000-126299600	Weak transcription	HSMM	muscle
3	chr5:126286000-126305200	Weak transcription	Left Ventricle	heart
4	chr5:126288000-126300600	Weak transcription	HUVEC	blood vessel
5	chr5:126292800-126299600	Weak transcription	Right Atrium	heart
6	chr5:126295800-126299800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr5:126296600-126298800	Enhancers	Fetal Heart	heart
8	chr5:126296800-126298200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr5:126297000-126298000	Enhancers	NHEK	skin
10	chr5:126297200-126298200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr5:126297200-126298200	Enhancers	Hela-S3	cervix
12	chr5:126297600-126298000	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr5:126297600-126301600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr5:126297800-126298600	Weak transcription	K562	blood
15	chr5:126297800-126299600	Weak transcription	Small Intestine	intestine
16	chr5:126297800-126299600	Weak transcription	NHDF-Ad	bronchial
17	chr5:126297800-126299800	Weak transcription	Primary B cells from peripheral blood	blood
18	chr5:126297800-126299800	Weak transcription	NHLF	lung
19	chr5:126297800-126300400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr5:126297800-126300400	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr5:126297800-126300400	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr5:126297800-126300400	Weak transcription	GM12878-XiMat	blood
23	chr5:126297800-126300400	Weak transcription	HMEC	breast
24	chr5:126297800-126300600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr5:126297800-126300800	Weak transcription	Stomach Mucosa	stomach
26	chr5:126297800-126307400	Weak transcription	Rectal Mucosa Donor 31	rectum

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