Variant report

Variant	rs6892168
Chromosome Location	chr5:126370775-126370776
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:126364056..126368822-chr5:126369920..126375542,6	MCF-7	breast:
2	chr5:126365480..126368335-chr5:126368822..126372507,5	MCF-7	breast:
3	chr5:126369468..126371186-chr5:126378784..126381001,2	K562	blood:
4	chr5:126370055..126372210-chr5:126405124..126407966,2	K562	blood:
5	chr5:126368719..126372377-chr5:126376805..126380284,3	K562	blood:
6	chr5:126370445..126372377-chr5:126376805..126378615,2	K562	blood:

Variant related genes	Relation type
ENSG00000173926	Chromatin interaction
ENSG00000164241	Chromatin interaction

Extended variants
information (count: 145 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:141)

rs_ID	r²[population]
rs10075097	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10519920	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12652417	0.89[ASN][1000 genomes]
rs12653444	0.89[ASN][1000 genomes]
rs12653823	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12654717	0.89[ASN][1000 genomes]
rs12654725	0.89[ASN][1000 genomes]
rs12655006	0.96[ASN][1000 genomes]
rs12655258	0.86[ASN][1000 genomes]
rs12655435	0.89[ASN][1000 genomes]
rs12655699	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12655726	0.96[ASN][1000 genomes]
rs12656223	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12656837	0.85[ASN][1000 genomes]
rs12658138	0.86[ASN][1000 genomes]
rs12659476	0.86[ASN][1000 genomes]
rs12659633	1.00[ASN][1000 genomes]
rs17165234	0.96[ASN][1000 genomes]
rs17165236	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17165239	0.96[ASN][1000 genomes]
rs17165244	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17165248	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17165251	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34416835	0.86[ASN][1000 genomes]
rs34738240	0.86[ASN][1000 genomes]
rs35566904	0.86[ASN][1000 genomes]
rs36091921	0.86[ASN][1000 genomes]
rs4141169	0.96[ASN][1000 genomes]
rs4141170	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55792418	0.86[ASN][1000 genomes]
rs55802546	0.89[ASN][1000 genomes]
rs56073877	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56094173	0.86[ASN][1000 genomes]
rs56122855	0.83[ASN][1000 genomes]
rs56124224	1.00[ASN][1000 genomes]
rs56272610	0.89[ASN][1000 genomes]
rs56279346	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56688052	0.86[ASN][1000 genomes]
rs56786115	0.86[ASN][1000 genomes]
rs57032367	0.86[ASN][1000 genomes]
rs57285842	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57833976	0.86[ASN][1000 genomes]
rs57915728	0.89[ASN][1000 genomes]
rs58030771	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58164143	1.00[ASN][1000 genomes]
rs58249730	0.86[ASN][1000 genomes]
rs58262537	0.86[ASN][1000 genomes]
rs58527455	0.89[ASN][1000 genomes]
rs58646561	0.86[ASN][1000 genomes]
rs58754116	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59459356	0.86[ASN][1000 genomes]
rs59643871	0.86[ASN][1000 genomes]
rs59676931	0.86[ASN][1000 genomes]
rs59770843	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59814275	0.86[ASN][1000 genomes]
rs60138815	0.86[ASN][1000 genomes]
rs60615137	0.86[ASN][1000 genomes]
rs60781824	0.86[ASN][1000 genomes]
rs60889784	0.86[ASN][1000 genomes]
rs60892581	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61279308	0.89[ASN][1000 genomes]
rs61544197	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61679093	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61685918	0.86[ASN][1000 genomes]
rs61697996	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6595747	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6860581	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6862462	0.80[ASN][1000 genomes]
rs6870711	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6872893	1.00[ASN][1000 genomes]
rs6877692	1.00[ASN][1000 genomes]
rs6882025	1.00[ASN][1000 genomes]
rs6886131	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73335490	0.82[ASN][1000 genomes]
rs73335494	0.82[ASN][1000 genomes]
rs73335498	0.85[ASN][1000 genomes]
rs73335501	0.85[ASN][1000 genomes]
rs73337225	0.85[ASN][1000 genomes]
rs73337229	0.86[ASN][1000 genomes]
rs73337233	0.86[ASN][1000 genomes]
rs73337299	0.89[ASN][1000 genomes]
rs73339248	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73339251	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73339283	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73339293	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73783496	0.86[ASN][1000 genomes]
rs73783501	0.86[ASN][1000 genomes]
rs73783503	0.89[ASN][1000 genomes]
rs73783504	0.89[ASN][1000 genomes]
rs73783506	0.89[ASN][1000 genomes]
rs73783507	0.89[ASN][1000 genomes]
rs73783529	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786207	0.86[ASN][1000 genomes]
rs73786209	0.86[ASN][1000 genomes]
rs73786212	0.86[ASN][1000 genomes]
rs73786239	0.86[ASN][1000 genomes]
rs73786240	0.86[ASN][1000 genomes]
rs73786241	0.86[ASN][1000 genomes]
rs73786242	0.86[ASN][1000 genomes]
rs73786244	0.86[ASN][1000 genomes]
rs73786246	0.86[ASN][1000 genomes]
rs73786247	0.86[ASN][1000 genomes]
rs73786249	0.86[ASN][1000 genomes]
rs73786250	0.86[ASN][1000 genomes]
rs73786251	0.86[ASN][1000 genomes]
rs73786252	0.86[ASN][1000 genomes]
rs73786253	0.86[ASN][1000 genomes]
rs73786255	0.86[ASN][1000 genomes]
rs73786259	0.86[ASN][1000 genomes]
rs73786260	0.86[ASN][1000 genomes]
rs73786261	0.86[ASN][1000 genomes]
rs73786262	0.86[ASN][1000 genomes]
rs73786264	0.86[ASN][1000 genomes]
rs73786265	0.86[ASN][1000 genomes]
rs73786266	0.86[ASN][1000 genomes]
rs73786267	0.86[ASN][1000 genomes]
rs73786268	0.86[ASN][1000 genomes]
rs73786269	0.86[ASN][1000 genomes]
rs73786270	0.86[ASN][1000 genomes]
rs73786271	0.86[ASN][1000 genomes]
rs73786272	0.84[ASN][1000 genomes]
rs73786276	0.89[ASN][1000 genomes]
rs73786277	0.89[ASN][1000 genomes]
rs73786278	0.89[ASN][1000 genomes]
rs73786280	0.89[ASN][1000 genomes]
rs73786281	0.89[ASN][1000 genomes]
rs73786282	0.89[ASN][1000 genomes]
rs73786283	0.89[ASN][1000 genomes]
rs73786284	0.89[ASN][1000 genomes]
rs73786285	0.89[ASN][1000 genomes]
rs73786287	0.89[ASN][1000 genomes]
rs73786288	0.89[ASN][1000 genomes]
rs73786290	0.89[ASN][1000 genomes]
rs73786294	0.89[ASN][1000 genomes]
rs73786295	0.89[ASN][1000 genomes]
rs73786298	0.89[ASN][1000 genomes]
rs73787403	0.89[ASN][1000 genomes]
rs73787404	0.89[ASN][1000 genomes]
rs73787406	0.89[ASN][1000 genomes]
rs7709865	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9918233	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024265	chr5:126213004-126691163	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv869897	chr5:126224358-126445210	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3470686	chr5:126369956-126370778	Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
4	esv3470687	chr5:126369956-126370778	Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126367600-126375800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:126367600-126376000	Weak transcription	Left Ventricle	heart
3	chr5:126367600-126376600	Weak transcription	Right Atrium	heart
4	chr5:126367600-126382000	Weak transcription	Primary B cells from cord blood	blood
5	chr5:126367600-126391800	Weak transcription	GM12878-XiMat	blood
6	chr5:126367800-126373200	Weak transcription	Fetal Heart	heart
7	chr5:126367800-126376600	Weak transcription	Pancreas	Pancrea
8	chr5:126368000-126376400	Weak transcription	K562	blood
9	chr5:126368000-126387200	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr5:126370200-126379000	Weak transcription	Primary T cells from cord blood	blood

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