Variant report

Variant	rs73337225
Chromosome Location	chr5:126271762-126271763
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:126269691..126272245-chr5:126276358..126279314,2	K562	blood:
2	chr5:126252210..126254768-chr5:126270259..126272525,2	K562	blood:

Variant related genes	Relation type
ENSG00000173926	Chromatin interaction

Extended variants
information (count: 197 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:195)

rs_ID	r²[population]
rs10040840	0.89[ASN][1000 genomes]
rs10075097	0.82[ASN][1000 genomes]
rs10519919	0.84[EUR][1000 genomes]
rs10519920	0.82[ASN][1000 genomes]
rs10519922	0.84[EUR][1000 genomes]
rs10519923	0.84[EUR][1000 genomes]
rs12518420	0.84[EUR][1000 genomes]
rs12651864	0.84[EUR][1000 genomes]
rs12652390	0.84[EUR][1000 genomes]
rs12652417	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12653000	0.84[EUR][1000 genomes]
rs12653290	0.84[EUR][1000 genomes]
rs12653444	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12653823	0.82[ASN][1000 genomes]
rs12654717	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12654725	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12655006	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12655199	0.84[EUR][1000 genomes]
rs12655258	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12655319	0.84[EUR][1000 genomes]
rs12655435	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12655605	0.84[EUR][1000 genomes]
rs12655699	0.82[ASN][1000 genomes]
rs12655726	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12655928	0.84[EUR][1000 genomes]
rs12656223	0.85[ASN][1000 genomes]
rs12656236	0.84[EUR][1000 genomes]
rs12656537	0.84[EUR][1000 genomes]
rs12656837	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12658138	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12658599	0.84[EUR][1000 genomes]
rs12658816	0.84[EUR][1000 genomes]
rs12658821	0.84[EUR][1000 genomes]
rs12658822	0.81[AFR][1000 genomes]
rs12659476	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12659607	0.84[EUR][1000 genomes]
rs12659614	0.84[EUR][1000 genomes]
rs12659633	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17165192	0.84[EUR][1000 genomes]
rs17165194	0.84[EUR][1000 genomes]
rs17165211	0.84[EUR][1000 genomes]
rs17165228	0.84[EUR][1000 genomes]
rs17165234	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17165236	0.82[ASN][1000 genomes]
rs17165239	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17165244	0.82[ASN][1000 genomes]
rs17165248	0.82[ASN][1000 genomes]
rs17165249	0.84[EUR][1000 genomes]
rs17165251	0.82[ASN][1000 genomes]
rs34416835	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34738240	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35566904	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35627668	0.84[EUR][1000 genomes]
rs36091921	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4141169	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4141170	0.82[ASN][1000 genomes]
rs55792418	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55802546	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56073877	0.82[ASN][1000 genomes]
rs56094173	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56122855	0.93[ASN][1000 genomes]
rs56124224	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56272610	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56279346	0.80[ASN][1000 genomes]
rs56688052	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56689722	0.84[EUR][1000 genomes]
rs56786115	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57032367	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57052202	0.84[EUR][1000 genomes]
rs57081850	0.84[EUR][1000 genomes]
rs57285842	0.82[ASN][1000 genomes]
rs57485054	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs57627287	0.84[EUR][1000 genomes]
rs57700815	0.84[EUR][1000 genomes]
rs57833976	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57915728	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58030771	0.82[ASN][1000 genomes]
rs58164143	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58249730	0.96[ASN][1000 genomes]
rs58262537	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58527455	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58646561	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58754116	0.82[ASN][1000 genomes]
rs58894799	0.84[EUR][1000 genomes]
rs59459356	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59489123	0.84[EUR][1000 genomes]
rs59643871	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59676931	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59770843	0.82[ASN][1000 genomes]
rs59814275	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60138815	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60615137	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60636815	0.84[EUR][1000 genomes]
rs60781824	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60889784	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60892581	0.81[ASN][1000 genomes]
rs61031864	0.84[EUR][1000 genomes]
rs61258380	0.84[EUR][1000 genomes]
rs61279308	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61496590	0.87[AFR][1000 genomes]
rs61544197	0.82[ASN][1000 genomes]
rs61653213	0.84[EUR][1000 genomes]
rs61679093	0.82[ASN][1000 genomes]
rs61685918	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61697996	0.82[ASN][1000 genomes]
rs6595747	0.85[ASN][1000 genomes]
rs6860581	0.85[ASN][1000 genomes]
rs6862462	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6864607	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6872893	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6877692	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6882025	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6883181	0.84[EUR][1000 genomes]
rs6886131	0.85[ASN][1000 genomes]
rs6888532	0.84[EUR][1000 genomes]
rs6892168	0.85[ASN][1000 genomes]
rs6893763	0.84[EUR][1000 genomes]
rs6899030	0.84[EUR][1000 genomes]
rs72505648	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73335426	0.86[AFR][1000 genomes]
rs73335444	0.89[ASN][1000 genomes]
rs73335447	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73335461	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73335474	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73335490	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73335494	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73335498	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73335501	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73337229	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73337233	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73337299	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73339248	0.85[ASN][1000 genomes]
rs73339251	0.82[ASN][1000 genomes]
rs73339283	0.82[ASN][1000 genomes]
rs73339293	0.82[ASN][1000 genomes]
rs73783476	0.89[ASN][1000 genomes]
rs73783496	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73783501	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73783503	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73783504	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73783506	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73783507	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73783529	0.82[ASN][1000 genomes]
rs73786207	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786209	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786212	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786239	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786240	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786241	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786242	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786244	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786246	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786247	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786249	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786250	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786251	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786252	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786253	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786255	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786259	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786260	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786261	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786262	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786264	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786265	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786266	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786267	0.96[ASN][1000 genomes]
rs73786268	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786269	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786270	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786271	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73786272	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73786276	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73786277	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73786278	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73786280	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73786281	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73786282	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73786283	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73786284	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73786285	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73786287	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73786288	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73786290	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73786294	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73786295	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73786298	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73787403	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73787404	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73787406	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7701976	0.89[ASN][1000 genomes]
rs7709865	0.93[ASN][1000 genomes]
rs7715377	0.95[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7727719	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9918233	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024265	chr5:126213004-126691163	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv869897	chr5:126224358-126445210	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126253600-126300400	Weak transcription	Primary B cells from cord blood	blood
2	chr5:126254000-126277800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr5:126254000-126278800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr5:126255400-126272400	Weak transcription	HSMM	muscle
5	chr5:126255600-126272400	Weak transcription	HSMMtube	muscle
6	chr5:126257800-126274000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr5:126258000-126274800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr5:126262000-126274200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr5:126262400-126277600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr5:126263200-126280800	Weak transcription	K562	blood
11	chr5:126264600-126283000	Weak transcription	Primary T cells from cord blood	blood
12	chr5:126267200-126282600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr5:126268000-126272400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr5:126268200-126272400	Weak transcription	Psoas Muscle	Psoas
15	chr5:126268200-126280000	Weak transcription	Right Ventricle	heart
16	chr5:126268400-126272600	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr5:126269000-126272400	Weak transcription	Primary B cells from peripheral blood	blood
18	chr5:126269000-126272600	Weak transcription	Fetal Heart	heart
19	chr5:126271000-126273000	Enhancers	Left Ventricle	heart

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