Variant report

Variant	rs60244211
Chromosome Location	chr5:126286808-126286809
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:126201240..126202876-chr5:126283955..126286881,2	K562	blood:

Extended variants
information (count: 164 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:162)

rs_ID	r²[population]
rs10519919	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10519922	0.82[EUR][1000 genomes]
rs10519923	0.82[EUR][1000 genomes]
rs12518420	0.82[EUR][1000 genomes]
rs12651864	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12652390	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12652417	0.82[EUR][1000 genomes]
rs12653000	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12653290	0.82[EUR][1000 genomes]
rs12653444	0.82[EUR][1000 genomes]
rs12654717	0.82[EUR][1000 genomes]
rs12654725	0.82[EUR][1000 genomes]
rs12654808	0.95[ASN][1000 genomes]
rs12655006	0.82[EUR][1000 genomes]
rs12655199	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12655223	0.95[ASN][1000 genomes]
rs12655258	0.82[EUR][1000 genomes]
rs12655319	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12655435	0.82[EUR][1000 genomes]
rs12655605	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12655726	0.82[EUR][1000 genomes]
rs12655928	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12655991	0.95[ASN][1000 genomes]
rs12656236	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12656537	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12656837	0.82[EUR][1000 genomes]
rs12658138	0.82[EUR][1000 genomes]
rs12658174	0.95[ASN][1000 genomes]
rs12658599	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12658608	0.85[ASN][1000 genomes]
rs12658816	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12658821	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12658822	0.90[ASN][1000 genomes]
rs12659476	0.82[EUR][1000 genomes]
rs12659607	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12659614	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12659633	0.82[EUR][1000 genomes]
rs17165192	0.82[EUR][1000 genomes]
rs17165194	0.82[EUR][1000 genomes]
rs17165211	0.82[EUR][1000 genomes]
rs17165228	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17165234	0.82[EUR][1000 genomes]
rs17165239	0.82[EUR][1000 genomes]
rs17165249	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34416835	0.82[EUR][1000 genomes]
rs34738240	0.82[EUR][1000 genomes]
rs35566904	0.82[EUR][1000 genomes]
rs35627668	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36091921	0.82[EUR][1000 genomes]
rs3812061	0.90[ASN][1000 genomes]
rs4141169	0.82[EUR][1000 genomes]
rs55792418	0.82[EUR][1000 genomes]
rs55802546	0.82[EUR][1000 genomes]
rs56094173	0.82[EUR][1000 genomes]
rs56124224	0.82[EUR][1000 genomes]
rs56272610	0.82[EUR][1000 genomes]
rs56688052	0.82[EUR][1000 genomes]
rs56689722	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56786115	0.82[EUR][1000 genomes]
rs57031083	0.95[ASN][1000 genomes]
rs57032367	0.82[EUR][1000 genomes]
rs57052202	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57081850	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57113926	0.95[ASN][1000 genomes]
rs57627287	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57700815	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57833976	0.82[EUR][1000 genomes]
rs57906418	1.00[ASN][1000 genomes]
rs57915728	0.82[EUR][1000 genomes]
rs58164143	0.82[EUR][1000 genomes]
rs58249730	0.90[EUR][1000 genomes]
rs58262537	0.82[EUR][1000 genomes]
rs58527455	0.82[EUR][1000 genomes]
rs58646561	0.82[EUR][1000 genomes]
rs58894799	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59459356	0.82[EUR][1000 genomes]
rs59489123	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59643871	0.82[EUR][1000 genomes]
rs59676931	0.82[EUR][1000 genomes]
rs59814275	0.82[EUR][1000 genomes]
rs60138815	0.82[EUR][1000 genomes]
rs60615137	0.82[EUR][1000 genomes]
rs60636815	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60781824	0.82[EUR][1000 genomes]
rs60889784	0.82[EUR][1000 genomes]
rs61031864	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61258380	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61279308	0.82[EUR][1000 genomes]
rs61463824	0.95[ASN][1000 genomes]
rs61496590	0.95[ASN][1000 genomes]
rs61647801	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs61653213	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61685918	0.82[EUR][1000 genomes]
rs6862462	0.82[EUR][1000 genomes]
rs6872893	0.82[EUR][1000 genomes]
rs6877692	0.82[EUR][1000 genomes]
rs6882025	0.82[EUR][1000 genomes]
rs6883181	0.82[EUR][1000 genomes]
rs6888532	0.82[EUR][1000 genomes]
rs6893763	0.82[EUR][1000 genomes]
rs6899030	0.82[EUR][1000 genomes]
rs73335426	0.95[ASN][1000 genomes]
rs73335490	0.82[EUR][1000 genomes]
rs73335494	0.82[EUR][1000 genomes]
rs73335498	0.82[EUR][1000 genomes]
rs73335501	0.82[EUR][1000 genomes]
rs73337229	0.82[EUR][1000 genomes]
rs73337233	0.82[EUR][1000 genomes]
rs73337299	0.82[EUR][1000 genomes]
rs73783496	0.82[EUR][1000 genomes]
rs73783501	0.82[EUR][1000 genomes]
rs73783503	0.82[EUR][1000 genomes]
rs73783504	0.82[EUR][1000 genomes]
rs73783506	0.82[EUR][1000 genomes]
rs73783507	0.82[EUR][1000 genomes]
rs73786207	0.82[EUR][1000 genomes]
rs73786209	0.82[EUR][1000 genomes]
rs73786212	0.82[EUR][1000 genomes]
rs73786239	0.82[EUR][1000 genomes]
rs73786240	0.82[EUR][1000 genomes]
rs73786241	0.82[EUR][1000 genomes]
rs73786242	0.82[EUR][1000 genomes]
rs73786244	0.82[EUR][1000 genomes]
rs73786246	0.82[EUR][1000 genomes]
rs73786247	0.82[EUR][1000 genomes]
rs73786249	0.82[EUR][1000 genomes]
rs73786250	0.82[EUR][1000 genomes]
rs73786251	0.82[EUR][1000 genomes]
rs73786252	0.82[EUR][1000 genomes]
rs73786253	0.82[EUR][1000 genomes]
rs73786255	0.82[EUR][1000 genomes]
rs73786259	0.82[EUR][1000 genomes]
rs73786260	0.82[EUR][1000 genomes]
rs73786261	0.82[EUR][1000 genomes]
rs73786262	0.82[EUR][1000 genomes]
rs73786264	0.82[EUR][1000 genomes]
rs73786265	0.82[EUR][1000 genomes]
rs73786266	0.82[EUR][1000 genomes]
rs73786268	0.82[EUR][1000 genomes]
rs73786269	0.82[EUR][1000 genomes]
rs73786270	0.82[EUR][1000 genomes]
rs73786271	0.82[EUR][1000 genomes]
rs73786272	0.82[EUR][1000 genomes]
rs73786276	0.82[EUR][1000 genomes]
rs73786277	0.82[EUR][1000 genomes]
rs73786278	0.82[EUR][1000 genomes]
rs73786280	0.82[EUR][1000 genomes]
rs73786281	0.82[EUR][1000 genomes]
rs73786282	0.82[EUR][1000 genomes]
rs73786283	0.82[EUR][1000 genomes]
rs73786284	0.82[EUR][1000 genomes]
rs73786285	0.82[EUR][1000 genomes]
rs73786287	0.82[EUR][1000 genomes]
rs73786288	0.82[EUR][1000 genomes]
rs73786290	0.82[EUR][1000 genomes]
rs73786294	0.82[EUR][1000 genomes]
rs73786295	0.82[EUR][1000 genomes]
rs73786298	0.82[EUR][1000 genomes]
rs73787403	0.82[EUR][1000 genomes]
rs73787404	0.82[EUR][1000 genomes]
rs73787406	0.82[EUR][1000 genomes]
rs9918233	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024265	chr5:126213004-126691163	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv869897	chr5:126224358-126445210	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126253600-126300400	Weak transcription	Primary B cells from cord blood	blood
2	chr5:126275000-126299600	Weak transcription	HSMM	muscle
3	chr5:126276200-126290400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:126278800-126287000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr5:126279800-126287800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr5:126282000-126287000	Enhancers	Fetal Heart	heart
7	chr5:126286000-126287200	Weak transcription	HUVEC	blood vessel
8	chr5:126286000-126292600	Weak transcription	Right Atrium	heart
9	chr5:126286000-126305200	Weak transcription	Left Ventricle	heart
10	chr5:126286800-126297000	Weak transcription	K562	blood

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