Variant report

Variant	rs56171951
Chromosome Location	chr5:126519421-126519422
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:126501750..126504423-chr5:126518489..126521210,2	K562	blood:
2	chr17:32786221..32786983-chr5:126519202..126519917,2	MCF-7	breast:

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10519919	0.92[EUR][1000 genomes]
rs10519922	0.92[EUR][1000 genomes]
rs10519923	0.92[EUR][1000 genomes]
rs12518420	0.92[EUR][1000 genomes]
rs12651864	0.92[EUR][1000 genomes]
rs12652019	0.83[EUR][1000 genomes]
rs12652390	0.92[EUR][1000 genomes]
rs12652417	0.92[EUR][1000 genomes]
rs12653000	0.92[EUR][1000 genomes]
rs12653290	0.92[EUR][1000 genomes]
rs12653444	0.92[EUR][1000 genomes]
rs12654313	0.83[EUR][1000 genomes]
rs12654717	0.92[EUR][1000 genomes]
rs12654725	0.92[EUR][1000 genomes]
rs12655006	0.92[EUR][1000 genomes]
rs12655199	0.92[EUR][1000 genomes]
rs12655435	0.92[EUR][1000 genomes]
rs12655605	0.92[EUR][1000 genomes]
rs12655726	0.92[EUR][1000 genomes]
rs12655928	0.92[EUR][1000 genomes]
rs12656236	0.92[EUR][1000 genomes]
rs12656537	0.92[EUR][1000 genomes]
rs12658821	0.92[EUR][1000 genomes]
rs12659476	0.92[EUR][1000 genomes]
rs12659607	0.92[EUR][1000 genomes]
rs12659614	0.92[EUR][1000 genomes]
rs12659633	0.92[EUR][1000 genomes]
rs17165192	0.92[EUR][1000 genomes]
rs17165194	0.92[EUR][1000 genomes]
rs17165211	0.92[EUR][1000 genomes]
rs17165228	0.92[EUR][1000 genomes]
rs17165234	0.92[EUR][1000 genomes]
rs17165239	0.92[EUR][1000 genomes]
rs17165249	0.92[EUR][1000 genomes]
rs17762544	0.83[EUR][1000 genomes]
rs17839703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34416835	0.92[EUR][1000 genomes]
rs34738240	0.92[EUR][1000 genomes]
rs35566904	0.92[EUR][1000 genomes]
rs35627668	0.92[EUR][1000 genomes]
rs36091921	0.92[EUR][1000 genomes]
rs4141169	0.92[EUR][1000 genomes]
rs55802546	0.92[EUR][1000 genomes]
rs56094173	0.92[EUR][1000 genomes]
rs56124224	0.92[EUR][1000 genomes]
rs56272610	0.92[EUR][1000 genomes]
rs56689722	0.92[EUR][1000 genomes]
rs57915728	0.92[EUR][1000 genomes]
rs58164143	0.92[EUR][1000 genomes]
rs58527455	0.92[EUR][1000 genomes]
rs61031864	0.92[EUR][1000 genomes]
rs61258380	0.92[EUR][1000 genomes]
rs61279308	0.92[EUR][1000 genomes]
rs61653213	0.92[EUR][1000 genomes]
rs61685918	0.92[EUR][1000 genomes]
rs6872893	0.92[EUR][1000 genomes]
rs6877692	0.92[EUR][1000 genomes]
rs6882025	0.92[EUR][1000 genomes]
rs6883181	0.92[EUR][1000 genomes]
rs6888532	0.92[EUR][1000 genomes]
rs6893763	0.92[EUR][1000 genomes]
rs6899030	0.92[EUR][1000 genomes]
rs73337299	0.92[EUR][1000 genomes]
rs73783503	0.92[EUR][1000 genomes]
rs73783504	0.92[EUR][1000 genomes]
rs73783506	0.92[EUR][1000 genomes]
rs73783507	0.92[EUR][1000 genomes]
rs73786259	0.92[EUR][1000 genomes]
rs73786260	0.92[EUR][1000 genomes]
rs73786261	0.92[EUR][1000 genomes]
rs73786262	0.92[EUR][1000 genomes]
rs73786264	0.92[EUR][1000 genomes]
rs73786265	0.92[EUR][1000 genomes]
rs73786266	0.92[EUR][1000 genomes]
rs73786267	0.84[EUR][1000 genomes]
rs73786268	0.92[EUR][1000 genomes]
rs73786269	0.92[EUR][1000 genomes]
rs73786270	0.92[EUR][1000 genomes]
rs73786271	0.92[EUR][1000 genomes]
rs73786272	0.92[EUR][1000 genomes]
rs73786276	0.92[EUR][1000 genomes]
rs73786277	0.92[EUR][1000 genomes]
rs73786278	0.92[EUR][1000 genomes]
rs73786280	0.92[EUR][1000 genomes]
rs73786281	0.92[EUR][1000 genomes]
rs73786282	0.92[EUR][1000 genomes]
rs73786283	0.92[EUR][1000 genomes]
rs73786284	0.92[EUR][1000 genomes]
rs73786285	0.92[EUR][1000 genomes]
rs73786287	0.92[EUR][1000 genomes]
rs73786288	0.92[EUR][1000 genomes]
rs73786290	0.92[EUR][1000 genomes]
rs73786294	0.92[EUR][1000 genomes]
rs73786295	0.92[EUR][1000 genomes]
rs73786298	0.92[EUR][1000 genomes]
rs73787403	0.92[EUR][1000 genomes]
rs73787404	0.92[EUR][1000 genomes]
rs73787406	0.92[EUR][1000 genomes]
rs9918233	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024265	chr5:126213004-126691163	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv521086	chr5:126519351-126525350	Weak transcription Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126519200-126519600	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links