Variant report

Variant	rs55814742
Chromosome Location	chr6:113774271-113774272
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10484461	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17180247	1.00[ASN][1000 genomes]
rs34181506	1.00[ASN][1000 genomes]
rs35702691	1.00[ASN][1000 genomes]
rs35941847	1.00[ASN][1000 genomes]
rs55976517	0.87[AFR][1000 genomes]
rs58061464	1.00[ASN][1000 genomes]
rs62415421	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415455	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415456	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62424182	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62424183	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62424184	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62424185	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62424186	0.94[EUR][1000 genomes]
rs62424187	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62424189	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62424191	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73543855	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73765203	0.89[AFR][1000 genomes]
rs73768452	0.87[AFR][1000 genomes]
rs7741342	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9918379	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1034256	chr6:113703567-113793790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1021815	chr6:113703567-113799956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1018357	chr6:113748468-113781070	Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv518991	chr6:113760526-113799618	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113769800-113777800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:113770000-113778200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:113771400-113777800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:113771400-113779400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:113771600-113777800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:113771600-113782400	Weak transcription	Colon Smooth Muscle	Colon
7	chr6:113772200-113777400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:113772200-113777800	Weak transcription	NHLF	lung
9	chr6:113772400-113777800	Weak transcription	HSMM	muscle
10	chr6:113772400-113785800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr6:113772600-113777800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:113772600-113778400	Weak transcription	Fetal Lung	lung
13	chr6:113773400-113776600	Weak transcription	Placenta	Placenta
14	chr6:113774000-113774800	Enhancers	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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