Variant report

Variant	rs62424183
Chromosome Location	chr6:113727881-113727882
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10484461	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075102	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17075116	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17180247	1.00[ASN][1000 genomes]
rs34181506	1.00[ASN][1000 genomes]
rs35702691	1.00[ASN][1000 genomes]
rs35941847	1.00[ASN][1000 genomes]
rs55814742	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58061464	1.00[ASN][1000 genomes]
rs61232107	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62415421	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415455	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415456	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62421548	0.81[AMR][1000 genomes]
rs62421550	0.85[AMR][1000 genomes]
rs62421552	0.81[AMR][1000 genomes]
rs62421553	0.81[AMR][1000 genomes]
rs62421554	0.81[AMR][1000 genomes]
rs62421555	0.81[AMR][1000 genomes]
rs62421556	0.81[AMR][1000 genomes]
rs62421557	0.85[AMR][1000 genomes]
rs62421559	0.81[AMR][1000 genomes]
rs62424162	0.86[EUR][1000 genomes]
rs62424182	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62424184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62424185	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62424186	0.95[EUR][1000 genomes]
rs62424187	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62424189	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62424191	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6908767	0.94[AFR][1000 genomes]
rs73543855	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7741342	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9918379	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv830778	chr6:113662011-113729804	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1034256	chr6:113703567-113793790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1021815	chr6:113703567-113799956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113726200-113728200	Enhancers	NHDF-Ad	bronchial
2	chr6:113726200-113736800	Weak transcription	Colon Smooth Muscle	Colon
3	chr6:113726400-113728000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:113726800-113728200	Enhancers	NHLF	lung
5	chr6:113727200-113728000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:113727200-113728000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:113727600-113732400	Weak transcription	Ovary	ovary
8	chr6:113727800-113731000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:113727800-113731400	Weak transcription	Stomach Mucosa	stomach
10	chr6:113727800-113733600	Weak transcription	Fetal Kidney	kidney
11	chr6:113727800-113733800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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