Variant report

Variant	rs62421553
Chromosome Location	chr6:113709578-113709579
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs17075102	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17075116	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs536010	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs585899	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs589664	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61232107	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs620138	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs620611	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62421548	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62421550	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62421552	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62421554	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62421555	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62421556	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62421557	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62421559	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62424160	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62424162	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62424182	0.81[AMR][1000 genomes]
rs62424183	0.81[AMR][1000 genomes]
rs62424184	0.81[AMR][1000 genomes]
rs635144	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs663806	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6918891	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6931154	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6931298	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs720492	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7739782	0.80[ASN][1000 genomes]
rs9481345	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9918379	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv830778	chr6:113662011-113729804	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1034256	chr6:113703567-113793790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1021815	chr6:113703567-113799956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113704600-113712000	Weak transcription	Fetal Stomach	stomach
2	chr6:113706800-113715600	Weak transcription	Fetal Lung	lung
3	chr6:113707400-113717600	Weak transcription	Osteobl	bone
4	chr6:113709400-113712000	Weak transcription	Ovary	ovary

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