Variant report

Variant	rs720492
Chromosome Location	chr6:113715593-113715594
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs17075102	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17075116	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs536010	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs585899	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs589664	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61232107	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs620138	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs620611	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62421548	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62421550	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62421552	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62421553	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62421554	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62421555	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62421556	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62421557	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62421559	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62424160	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62424162	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs635144	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs663806	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6918891	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6931154	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6931298	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9481345	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv830778	chr6:113662011-113729804	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1034256	chr6:113703567-113793790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1021815	chr6:113703567-113799956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113706800-113715600	Weak transcription	Fetal Lung	lung
2	chr6:113707400-113717600	Weak transcription	Osteobl	bone
3	chr6:113712200-113717000	Weak transcription	Ovary	ovary
4	chr6:113712200-113717200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:113712400-113716800	Weak transcription	Fetal Stomach	stomach
6	chr6:113714400-113716800	Weak transcription	Brain Germinal Matrix	brain
7	chr6:113714400-113717200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:113714400-113717600	Weak transcription	NHDF-Ad	bronchial
9	chr6:113714800-113717000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:113715400-113716200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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