Variant report

Variant	rs62421548
Chromosome Location	chr6:113706244-113706245
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs17075102	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17075116	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs536010	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs585899	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs589664	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61232107	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs620138	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs620611	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62421550	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62421552	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62421553	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62421554	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62421555	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62421556	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62421557	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62421559	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62424160	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62424162	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62424182	0.81[AMR][1000 genomes]
rs62424183	0.81[AMR][1000 genomes]
rs62424184	0.81[AMR][1000 genomes]
rs635144	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs663806	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6918891	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6931154	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6931298	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs720492	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9481345	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9918379	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv830778	chr6:113662011-113729804	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1034256	chr6:113703567-113793790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1021815	chr6:113703567-113799956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113699200-113706400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:113703600-113706400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:113703800-113706400	Weak transcription	Fetal Lung	lung
4	chr6:113704600-113712000	Weak transcription	Fetal Stomach	stomach
5	chr6:113704800-113706600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:113705000-113708600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:113705600-113707400	Enhancers	NHDF-Ad	bronchial
8	chr6:113705800-113706400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr6:113705800-113707000	Enhancers	NH-A	brain
10	chr6:113705800-113707200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:113705800-113707400	Enhancers	HSMM	muscle
12	chr6:113706000-113707000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:113706200-113706400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:113706200-113706600	Enhancers	Rectal Smooth Muscle	rectum
15	chr6:113706200-113706800	Enhancers	HUVEC	blood vessel
16	chr6:113706200-113707400	Enhancers	Osteobl	bone

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