Variant report

Variant	rs17075116
Chromosome Location	chr6:113720744-113720745
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10484461	0.85[EUR][1000 genomes]
rs17075102	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs536010	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs585899	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs589664	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61232107	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs620138	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs620611	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62415421	0.82[EUR][1000 genomes]
rs62421548	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62421550	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62421552	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62421553	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62421554	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62421555	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62421556	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62421557	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62421559	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62424160	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62424162	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62424182	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62424183	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62424184	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62424185	0.84[EUR][1000 genomes]
rs62424186	0.84[EUR][1000 genomes]
rs62424187	0.84[EUR][1000 genomes]
rs62424189	0.84[EUR][1000 genomes]
rs62424191	0.82[EUR][1000 genomes]
rs635144	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs663806	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6918891	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6931154	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6931298	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs720492	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73543855	0.82[EUR][1000 genomes]
rs7741342	0.82[EUR][1000 genomes]
rs9481345	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9918379	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv830778	chr6:113662011-113729804	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1034256	chr6:113703567-113793790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1021815	chr6:113703567-113799956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113717200-113722600	Weak transcription	HUVEC	blood vessel
2	chr6:113718000-113725400	Weak transcription	Colon Smooth Muscle	Colon
3	chr6:113718200-113727400	Weak transcription	Left Ventricle	heart
4	chr6:113718800-113722800	Weak transcription	NHDF-Ad	bronchial
5	chr6:113718800-113726800	Weak transcription	Fetal Lung	lung
6	chr6:113719600-113723800	Weak transcription	Fetal Stomach	stomach

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