Variant report

Variant	rs62424186
Chromosome Location	chr6:113742544-113742545
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10484461	0.91[EUR][1000 genomes]
rs17075102	0.84[EUR][1000 genomes]
rs17075116	0.84[EUR][1000 genomes]
rs55814742	0.94[EUR][1000 genomes]
rs61232107	0.84[EUR][1000 genomes]
rs62415421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62415455	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62415456	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62424162	0.84[EUR][1000 genomes]
rs62424182	0.95[EUR][1000 genomes]
rs62424183	0.95[EUR][1000 genomes]
rs62424184	0.95[EUR][1000 genomes]
rs62424185	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62424187	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62424189	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62424191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73543855	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7741342	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9918379	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1034256	chr6:113703567-113793790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1021815	chr6:113703567-113799956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113736000-113747200	Weak transcription	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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