Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:113752685..113754255-chr6:113760032..113762327,2	MCF-7	breast:
2	chr6:113753134..113757391-chr6:113759557..113761652,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000232316	Chromatin interaction

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10484461	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075102	0.82[EUR][1000 genomes]
rs17075116	0.82[EUR][1000 genomes]
rs17180247	1.00[ASN][1000 genomes]
rs34181506	1.00[ASN][1000 genomes]
rs35702691	1.00[ASN][1000 genomes]
rs35941847	1.00[ASN][1000 genomes]
rs55814742	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58061464	1.00[ASN][1000 genomes]
rs61232107	0.82[EUR][1000 genomes]
rs62415421	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415455	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62415456	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62424162	0.82[EUR][1000 genomes]
rs62424182	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62424183	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62424184	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62424185	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62424186	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62424187	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62424189	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62424191	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7741342	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9918379	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1034256	chr6:113703567-113793790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1021815	chr6:113703567-113799956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1018357	chr6:113748468-113781070	Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv518991	chr6:113760526-113799618	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113755800-113767800	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr6:113756200-113762800	Weak transcription	A549	lung
3	chr6:113761000-113761600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:113761200-113761600	Enhancers	HUES64 Cell Line	embryonic stem cell

Quick Search: