Variant report

Variant	rs17075102
Chromosome Location	chr6:113717721-113717722
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10484461	0.85[EUR][1000 genomes]
rs17075116	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs536010	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs585899	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs589664	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61232107	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs620138	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs620611	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62415421	0.82[EUR][1000 genomes]
rs62421548	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62421550	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62421552	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62421553	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62421554	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62421555	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62421556	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62421557	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62421559	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62424160	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62424162	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62424182	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62424183	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62424184	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62424185	0.84[EUR][1000 genomes]
rs62424186	0.84[EUR][1000 genomes]
rs62424187	0.84[EUR][1000 genomes]
rs62424189	0.84[EUR][1000 genomes]
rs62424191	0.82[EUR][1000 genomes]
rs635144	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs663806	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6918891	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6931154	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6931298	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs720492	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73543855	0.82[EUR][1000 genomes]
rs7741342	0.82[EUR][1000 genomes]
rs9481345	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9918379	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv830778	chr6:113662011-113729804	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1034256	chr6:113703567-113793790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1021815	chr6:113703567-113799956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113715600-113718800	Enhancers	Fetal Lung	lung
2	chr6:113716000-113718200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr6:113716400-113718200	Enhancers	Fetal Muscle Leg	muscle
4	chr6:113716800-113718200	Enhancers	Left Ventricle	heart
5	chr6:113716800-113719000	Enhancers	Fetal Stomach	stomach
6	chr6:113717000-113717800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:113717000-113717800	Enhancers	Ovary	ovary
8	chr6:113717000-113718200	Enhancers	Fetal Muscle Trunk	muscle
9	chr6:113717000-113719000	Enhancers	Fetal Heart	heart
10	chr6:113717200-113717800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:113717200-113717800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:113717200-113717800	Enhancers	Stomach Mucosa	stomach
13	chr6:113717200-113718000	Enhancers	Colon Smooth Muscle	Colon
14	chr6:113717200-113718800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:113717200-113722600	Weak transcription	HUVEC	blood vessel
16	chr6:113717400-113717800	Enhancers	Pancreas	Pancrea
17	chr6:113717400-113718000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr6:113717400-113718800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:113717600-113718200	Enhancers	Fetal Intestine Small	intestine
20	chr6:113717600-113718800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:113717600-113718800	Enhancers	NHDF-Ad	bronchial
22	chr6:113717600-113718800	Enhancers	Osteobl	bone

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