Variant report

Variant	rs62421559
Chromosome Location	chr6:113714329-113714330
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:113710899..113713233-chr6:113713434..113715224,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs17075102	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17075116	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs536010	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs585899	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs589664	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61232107	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs620138	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs620611	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62421548	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62421550	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62421552	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62421553	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62421554	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62421555	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62421556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62421557	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62424160	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62424162	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62424182	0.81[AMR][1000 genomes]
rs62424183	0.81[AMR][1000 genomes]
rs62424184	0.81[AMR][1000 genomes]
rs635144	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs663806	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6918891	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6931154	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6931298	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs720492	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9481345	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9918379	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv830778	chr6:113662011-113729804	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1034256	chr6:113703567-113793790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1021815	chr6:113703567-113799956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113706800-113715600	Weak transcription	Fetal Lung	lung
2	chr6:113707400-113717600	Weak transcription	Osteobl	bone
3	chr6:113711400-113714800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:113711800-113714400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:113711800-113714400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr6:113712200-113717000	Weak transcription	Ovary	ovary
7	chr6:113712200-113717200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:113712400-113716800	Weak transcription	Fetal Stomach	stomach
9	chr6:113713400-113714400	Enhancers	Brain Germinal Matrix	brain
10	chr6:113714000-113714400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:113714000-113714400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:113714000-113714400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:113714000-113714400	Enhancers	NHDF-Ad	bronchial
14	chr6:113714200-113714400	Enhancers	HUES64 Cell Line	embryonic stem cell

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