Variant report

Variant	rs635144
Chromosome Location	chr6:113707823-113707824
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:113701651..113703892-chr6:113706663..113709047,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs17075102	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17075116	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs536010	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs585899	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs589664	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61232107	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs620138	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs620611	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62421548	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62421550	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62421552	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62421553	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62421554	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62421555	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62421556	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62421557	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62421559	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62424160	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62424162	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs663806	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6918891	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6931154	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6931298	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs720492	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9481345	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv830778	chr6:113662011-113729804	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1034256	chr6:113703567-113793790	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1021815	chr6:113703567-113799956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113704600-113712000	Weak transcription	Fetal Stomach	stomach
2	chr6:113705000-113708600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:113706800-113715600	Weak transcription	Fetal Lung	lung
4	chr6:113707400-113717600	Weak transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links