Variant report

Variant	rs55830938
Chromosome Location	chr8:19735188-19735189
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:19727136..19729555-chr8:19732389..19735213,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10100420	1.00[AMR][1000 genomes]
rs10109854	1.00[AMR][1000 genomes]
rs12015247	1.00[AMR][1000 genomes]
rs259	1.00[AMR][1000 genomes]
rs28529022	1.00[AMR][1000 genomes]
rs56193920	1.00[AMR][1000 genomes]
rs57345602	1.00[AMR][1000 genomes]
rs58065180	1.00[AMR][1000 genomes]
rs59184895	1.00[AMR][1000 genomes]
rs61171174	1.00[AMR][1000 genomes]
rs7005541	1.00[AMR][1000 genomes]
rs73667439	1.00[AMR][1000 genomes]
rs73667442	1.00[AMR][1000 genomes]
rs73667448	1.00[AMR][1000 genomes]
rs73667450	1.00[AMR][1000 genomes]
rs73667452	1.00[AMR][1000 genomes]
rs73667456	1.00[AMR][1000 genomes]
rs73667457	1.00[AMR][1000 genomes]
rs73667458	1.00[AMR][1000 genomes]
rs73667460	1.00[AMR][1000 genomes]
rs73667464	1.00[AMR][1000 genomes]
rs73667466	1.00[AMR][1000 genomes]
rs73667467	1.00[AMR][1000 genomes]
rs73667471	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890625	chr8:19368697-19799641	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv610759	chr8:19561997-20068842	Enhancers Strong transcription Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv890631	chr8:19712564-19756813	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv498082	chr8:19722435-19873112	Bivalent Enhancer Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv520043	chr8:19733568-19738812	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:19733200-19735400	Enhancers	Adipose Nuclei	Adipose
2	chr8:19733200-19736400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr8:19733600-19735800	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr8:19734200-19735200	Enhancers	Primary B cells from cord blood	blood
5	chr8:19734200-19735200	Enhancers	Duodenum Mucosa	Duodenum
6	chr8:19735000-19735200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr8:19735000-19735400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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