Variant report

Variant	rs61171174
Chromosome Location	chr8:19707455-19707456
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:19674069..19678740-chr8:19703160..19710631,7	K562	blood:

Variant related genes	Relation type
ENSG00000104613	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs259	1.00[AMR][1000 genomes]
rs28529022	1.00[AMR][1000 genomes]
rs55830938	1.00[AMR][1000 genomes]
rs56193920	1.00[AMR][1000 genomes]
rs57345602	1.00[AMR][1000 genomes]
rs58065180	1.00[AMR][1000 genomes]
rs59184895	1.00[AMR][1000 genomes]
rs7005541	1.00[AMR][1000 genomes]
rs73667439	1.00[AMR][1000 genomes]
rs73667442	1.00[AMR][1000 genomes]
rs73667448	1.00[AMR][1000 genomes]
rs73667450	1.00[AMR][1000 genomes]
rs73667452	1.00[AMR][1000 genomes]
rs73667456	1.00[AMR][1000 genomes]
rs73667457	1.00[AMR][1000 genomes]
rs73667458	1.00[AMR][1000 genomes]
rs73667460	1.00[AMR][1000 genomes]
rs73667464	1.00[AMR][1000 genomes]
rs73667466	1.00[AMR][1000 genomes]
rs73667467	1.00[AMR][1000 genomes]
rs73667471	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890625	chr8:19368697-19799641	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv610759	chr8:19561997-20068842	Enhancers Strong transcription Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:19676000-19710200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:19676600-19707800	Strong transcription	Osteobl	bone
3	chr8:19677000-19710600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr8:19677200-19707800	Strong transcription	Primary T helper cells fromperipheralblood	blood
5	chr8:19677200-19710400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr8:19677200-19710400	Strong transcription	Placenta	Placenta
7	chr8:19677200-19710600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr8:19677400-19708400	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr8:19677400-19710400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr8:19677400-19710800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr8:19677600-19709400	Strong transcription	Sigmoid Colon	Sigmoid Colon
12	chr8:19679200-19710400	Strong transcription	Liver	Liver
13	chr8:19683600-19710200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr8:19684400-19711400	Strong transcription	A549	lung
15	chr8:19687600-19709400	Strong transcription	Hela-S3	cervix
16	chr8:19692400-19710200	Weak transcription	Colonic Mucosa	Colon
17	chr8:19692600-19712000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr8:19697200-19711800	Weak transcription	Rectal Smooth Muscle	rectum
19	chr8:19697400-19711400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr8:19700000-19714000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr8:19700200-19711400	Weak transcription	Fetal Brain Male	brain
22	chr8:19700800-19711200	Strong transcription	Fetal Stomach	stomach
23	chr8:19701800-19719400	Weak transcription	Fetal Heart	heart
24	chr8:19702000-19711400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr8:19702200-19708600	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr8:19702200-19711200	Weak transcription	HSMMtube	muscle
27	chr8:19702600-19708400	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr8:19702600-19708400	Weak transcription	Fetal Intestine Small	intestine
29	chr8:19702800-19713600	Weak transcription	Small Intestine	intestine
30	chr8:19703000-19708800	Weak transcription	NHEK	skin
31	chr8:19703200-19713400	Weak transcription	Fetal Lung	lung
32	chr8:19703400-19707800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr8:19703400-19708000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr8:19703400-19708800	Weak transcription	Brain Anterior Caudate	brain
35	chr8:19703400-19711400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr8:19703400-19711800	Weak transcription	Brain Substantia Nigra	brain
37	chr8:19703400-19712200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr8:19703400-19713800	Weak transcription	Fetal Kidney	kidney
39	chr8:19703600-19711000	Weak transcription	Colon Smooth Muscle	Colon
40	chr8:19703800-19709200	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr8:19704000-19708400	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr8:19704600-19710000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr8:19704600-19710600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr8:19704600-19711200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr8:19704800-19710600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr8:19704800-19710600	Strong transcription	Fetal Intestine Large	intestine
47	chr8:19705000-19711400	Weak transcription	K562	blood
48	chr8:19705000-19711600	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr8:19705200-19710400	Strong transcription	Primary monocytes fromperipheralblood	blood
50	chr8:19705200-19710400	Strong transcription	Pancreas	Pancrea

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