Variant report

Variant	rs73667442
Chromosome Location	chr8:19718597-19718598
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10100420	1.00[AMR][1000 genomes]
rs10109854	1.00[AMR][1000 genomes]
rs259	1.00[AMR][1000 genomes]
rs28529022	1.00[AMR][1000 genomes]
rs55830938	1.00[AMR][1000 genomes]
rs56193920	1.00[AMR][1000 genomes]
rs57345602	1.00[AMR][1000 genomes]
rs58065180	1.00[AMR][1000 genomes]
rs59184895	1.00[AMR][1000 genomes]
rs61171174	1.00[AMR][1000 genomes]
rs7005541	1.00[AMR][1000 genomes]
rs73667439	1.00[AMR][1000 genomes]
rs73667448	1.00[AMR][1000 genomes]
rs73667450	1.00[AMR][1000 genomes]
rs73667452	1.00[AMR][1000 genomes]
rs73667456	1.00[AMR][1000 genomes]
rs73667457	1.00[AMR][1000 genomes]
rs73667458	1.00[AMR][1000 genomes]
rs73667460	1.00[AMR][1000 genomes]
rs73667464	1.00[AMR][1000 genomes]
rs73667466	1.00[AMR][1000 genomes]
rs73667467	1.00[AMR][1000 genomes]
rs73667471	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890625	chr8:19368697-19799641	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv610759	chr8:19561997-20068842	Enhancers Strong transcription Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv890631	chr8:19712564-19756813	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:19701800-19719400	Weak transcription	Fetal Heart	heart
2	chr8:19710400-19719600	Weak transcription	Adipose Nuclei	Adipose
3	chr8:19717200-19719200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
4	chr8:19717200-19719800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
5	chr8:19717400-19719200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
6	chr8:19717400-19719400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr8:19717600-19719000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr8:19717600-19719400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
9	chr8:19718000-19719200	Weak transcription	Fetal Brain Male	brain
10	chr8:19718200-19718600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr8:19718200-19719000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr8:19718400-19718600	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
13	chr8:19718400-19718800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr8:19718400-19719200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
15	chr8:19718400-19719400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
16	chr8:19718400-19719400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links