Variant report

Variant	rs73667471
Chromosome Location	chr8:19807941-19807942
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:19807869..19810930-chr8:19812485..19816612,3	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10100420	1.00[AMR][1000 genomes]
rs10109854	1.00[AMR][1000 genomes]
rs12015247	1.00[AMR][1000 genomes]
rs259	1.00[AMR][1000 genomes]
rs28529022	1.00[AMR][1000 genomes]
rs55830938	1.00[AMR][1000 genomes]
rs56193920	1.00[AMR][1000 genomes]
rs57345602	1.00[AMR][1000 genomes]
rs58065180	1.00[AMR][1000 genomes]
rs59184895	1.00[AMR][1000 genomes]
rs61171174	1.00[AMR][1000 genomes]
rs7005541	1.00[AMR][1000 genomes]
rs73667439	1.00[AMR][1000 genomes]
rs73667442	1.00[AMR][1000 genomes]
rs73667448	1.00[AMR][1000 genomes]
rs73667450	1.00[AMR][1000 genomes]
rs73667452	1.00[AMR][1000 genomes]
rs73667456	1.00[AMR][1000 genomes]
rs73667457	1.00[AMR][1000 genomes]
rs73667458	1.00[AMR][1000 genomes]
rs73667460	1.00[AMR][1000 genomes]
rs73667464	1.00[AMR][1000 genomes]
rs73667466	1.00[AMR][1000 genomes]
rs73667467	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv610759	chr8:19561997-20068842	Enhancers Strong transcription Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv498082	chr8:19722435-19873112	Bivalent Enhancer Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	esv32767	chr8:19740189-19873082	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv1033511	chr8:19751299-20625091	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:19798200-19818400	Weak transcription	K562	blood
2	chr8:19798600-19808400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr8:19798600-19813400	Weak transcription	Ovary	ovary
4	chr8:19798600-19824200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr8:19799000-19813200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr8:19799800-19813000	Weak transcription	Fetal Brain Female	brain
7	chr8:19799800-19819600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr8:19800800-19823000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr8:19801400-19811000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr8:19802600-19811400	Weak transcription	Brain Germinal Matrix	brain
11	chr8:19802600-19813000	Weak transcription	Fetal Brain Male	brain
12	chr8:19804400-19819600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr8:19805000-19816600	Strong transcription	Fetal Lung	lung
14	chr8:19805000-19824800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr8:19805400-19809400	Strong transcription	Right Ventricle	heart
16	chr8:19805800-19824600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr8:19806000-19808200	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr8:19806200-19816200	Weak transcription	Aorta	Aorta
19	chr8:19806400-19808600	Strong transcription	Adipose Nuclei	Adipose
20	chr8:19806400-19811200	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr8:19806400-19819800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr8:19806800-19819600	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr8:19807000-19808800	Genic enhancers	Left Ventricle	heart
24	chr8:19807200-19808200	Strong transcription	Skeletal Muscle Male	skeletal muscle
25	chr8:19807200-19812000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr8:19807400-19809400	Genic enhancers	Fetal Heart	heart
27	chr8:19807600-19808400	Genic enhancers	Lung	lung
28	chr8:19807600-19810600	Weak transcription	Psoas Muscle	Psoas
29	chr8:19807800-19809000	Weak transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links