Variant report

Variant	rs55834021
Chromosome Location	chr1:94880607-94880608
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94879263..94881471-chr1:94882275..94884256,2	K562	blood:
2	chr1:94878270..94880710-chr1:94881581..94884110,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000117528	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11582784	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12034688	1.00[ASN][1000 genomes]
rs12087223	1.00[ASN][1000 genomes]
rs1929132	1.00[ASN][1000 genomes]
rs55803521	1.00[ASN][1000 genomes]
rs56023603	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56184400	1.00[ASN][1000 genomes]
rs56265999	1.00[ASN][1000 genomes]
rs61782652	1.00[ASN][1000 genomes]
rs61784299	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871097	chr1:94850443-94941890	Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94861600-94882800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:94874000-94882800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr1:94874000-94882800	Weak transcription	Fetal Brain Male	brain
4	chr1:94874600-94882600	Weak transcription	Fetal Kidney	kidney
5	chr1:94874600-94882800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr1:94876000-94883000	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr1:94877400-94882200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr1:94877600-94882400	Weak transcription	NHEK	skin
9	chr1:94877600-94882600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr1:94878800-94883200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr1:94879200-94882600	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr1:94879200-94882800	Weak transcription	Dnd41	blood
13	chr1:94879400-94882600	Weak transcription	Primary T cells from cord blood	blood
14	chr1:94879400-94882800	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr1:94879400-94883000	Weak transcription	Primary hematopoietic stem cells	blood
16	chr1:94879600-94882400	Weak transcription	A549	lung
17	chr1:94879800-94882800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr1:94880000-94882800	Weak transcription	Primary B cells from cord blood	blood
19	chr1:94880200-94880800	Enhancers	Fetal Thymus	thymus
20	chr1:94880600-94880800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr1:94880600-94880800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr1:94880600-94881400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr1:94880600-94882200	Weak transcription	Right Atrium	heart
24	chr1:94880600-94882800	Weak transcription	Thymus	Thymus

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