The 2.0 version of rSNPBase

Variant report

Variant rs56184400
Chromosome Location chr1:94692468-94692469
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:39 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:94668800-94699000 Weak transcription iPS-20b Cell Line embryonic stem cell
2 chr1:94673800-94698600 Weak transcription Fetal Muscle Trunk muscle
3 chr1:94673800-94701000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
4 chr1:94674000-94697000 Weak transcription HSMMtube muscle
5 chr1:94684800-94692800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
6 chr1:94684800-94698600 Weak transcription Left Ventricle heart
7 chr1:94685000-94701000 Weak transcription Right Ventricle heart
8 chr1:94685200-94696800 Weak transcription HepG2 liver
9 chr1:94685200-94700600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
10 chr1:94685200-94700800 Weak transcription NHLF lung
11 chr1:94685200-94701000 Weak transcription Psoas Muscle Psoas
12 chr1:94685400-94697400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
13 chr1:94685600-94696000 Weak transcription Breast Myoepithelial Primary Cells Breast
14 chr1:94685800-94693800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
15 chr1:94685800-94699400 Weak transcription Fetal Muscle Leg muscle
16 chr1:94688000-94693200 Weak transcription A549 lung
17 chr1:94688000-94694600 Weak transcription HMEC breast
18 chr1:94688200-94694200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
19 chr1:94688400-94694400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
20 chr1:94688600-94694600 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
21 chr1:94690400-94693600 Genic enhancers HUVEC blood vessel
22 chr1:94690400-94696400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
23 chr1:94691200-94692600 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
24 chr1:94691400-94692600 Enhancers Muscle Satellite Cultured Cells --
25 chr1:94691400-94693800 Enhancers Liver Liver
26 chr1:94691600-94692600 Weak transcription Pancreatic Islets Pancreatic Islet
27 chr1:94691600-94696200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
28 chr1:94691600-94696400 Weak transcription HSMM muscle
29 chr1:94691800-94692600 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
30 chr1:94691800-94692600 Enhancers Adipose Nuclei Adipose
31 chr1:94691800-94693400 Weak transcription Fetal Heart heart
32 chr1:94692000-94692600 Enhancers Skeletal Muscle Male skeletal muscle
33 chr1:94692000-94693600 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
34 chr1:94692200-94693200 Weak transcription Osteobl bone
35 chr1:94692200-94694000 Weak transcription NHEK skin
36 chr1:94692200-94694400 Weak transcription Skeletal Muscle Female skeletal muscle
37 chr1:94692200-94696600 Weak transcription NH-A brain
38 chr1:94692400-94692600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
39 chr1:94692400-94694400 Weak transcription NHDF-Ad bronchial

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Last update: Aug 31, 2015