Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1048854	1.00[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.82[MKK][hapmap];0.97[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11583999	1.00[ASN][1000 genomes]
rs1542728	1.00[CHD][hapmap]
rs17111243	0.82[YRI][hapmap]
rs17394161	1.00[ASN][1000 genomes]
rs17398377	1.00[ASN][1000 genomes]
rs1929132	1.00[ASN][1000 genomes]
rs2781575	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4847198	1.00[ASN][1000 genomes]
rs4847199	0.94[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4847292	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55763912	1.00[ASN][1000 genomes]
rs55803521	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56023603	1.00[ASN][1000 genomes]
rs56184400	1.00[ASN][1000 genomes]
rs56251025	1.00[ASN][1000 genomes]
rs56265999	1.00[ASN][1000 genomes]
rs61782652	1.00[ASN][1000 genomes]
rs61784299	1.00[ASN][1000 genomes]
rs71652552	1.00[ASN][1000 genomes]
rs7535005	1.00[ASN][1000 genomes]
rs7550859	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871416	chr1:94566311-94635028	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv871210	chr1:94579426-94629643	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94600600-94612200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:94608000-94614400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr1:94608400-94613800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:94608400-94632400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:94609800-94612400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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