Variant report

Variant	rs56023603
Chromosome Location	chr1:94775392-94775393
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94764343..94765905-chr1:94774402..94776813,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1048854	1.00[ASN][1000 genomes]
rs11582784	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11583999	1.00[ASN][1000 genomes]
rs12087223	1.00[ASN][1000 genomes]
rs17394161	1.00[ASN][1000 genomes]
rs17398377	1.00[ASN][1000 genomes]
rs1929132	1.00[ASN][1000 genomes]
rs2781575	1.00[ASN][1000 genomes]
rs4847198	1.00[ASN][1000 genomes]
rs4847199	1.00[ASN][1000 genomes]
rs4847288	1.00[ASN][1000 genomes]
rs4847292	1.00[ASN][1000 genomes]
rs55763912	1.00[ASN][1000 genomes]
rs55803521	1.00[ASN][1000 genomes]
rs55834021	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56184400	1.00[ASN][1000 genomes]
rs56251025	1.00[ASN][1000 genomes]
rs56265999	1.00[ASN][1000 genomes]
rs61782652	1.00[ASN][1000 genomes]
rs61784299	1.00[ASN][1000 genomes]
rs71652552	1.00[ASN][1000 genomes]
rs7535005	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94763400-94775800	Weak transcription	Psoas Muscle	Psoas
2	chr1:94766600-94775600	Weak transcription	Small Intestine	intestine
3	chr1:94767200-94775400	Weak transcription	Liver	Liver
4	chr1:94768400-94775800	Weak transcription	Pancreas	Pancrea
5	chr1:94771800-94775600	Weak transcription	NHLF	lung
6	chr1:94771800-94775800	Weak transcription	Left Ventricle	heart
7	chr1:94772000-94775800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr1:94772000-94776800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:94772000-94780600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr1:94772000-94781400	Weak transcription	Osteobl	bone
11	chr1:94772200-94775600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:94772800-94775600	Weak transcription	NHDF-Ad	bronchial
13	chr1:94772800-94776800	Weak transcription	Fetal Muscle Leg	muscle
14	chr1:94773200-94775600	Weak transcription	HUVEC	blood vessel
15	chr1:94774200-94775400	Enhancers	Fetal Heart	heart
16	chr1:94774200-94775600	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr1:94774200-94775800	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr1:94774400-94775800	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr1:94774400-94775800	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr1:94774600-94775600	Weak transcription	Gastric	stomach
21	chr1:94774600-94775800	Weak transcription	Lung	lung
22	chr1:94774600-94775800	Weak transcription	Right Atrium	heart
23	chr1:94774600-94787800	Weak transcription	Aorta	Aorta
24	chr1:94774800-94775800	Weak transcription	Ovary	ovary
25	chr1:94774800-94776400	Flanking Active TSS	HepG2	liver
26	chr1:94774800-94777000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr1:94775000-94775800	Weak transcription	Spleen	Spleen
28	chr1:94775000-94776400	Enhancers	A549	lung
29	chr1:94775000-94783000	Weak transcription	Right Ventricle	heart

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